Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 FP700111.2-201ENST00000619190 1892 ntBASIC18.18■□□□□ 0.5
CPNE4Q96A23 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 NME6-213ENST00000451657 871 ntTSL 2 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.18■□□□□ 0.5
CPNE4Q96A23 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 AL137060.1-201ENST00000618151 2648 ntBASIC18.18■□□□□ 0.5
CPNE4Q96A23 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CPNE4Q96A23 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.18■□□□□ 0.5
CPNE4Q96A23 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.17■□□□□ 0.5
CPNE4Q96A23 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
CPNE4Q96A23 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CPNE4Q96A23 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 AC007225.1-201ENST00000566331 1836 ntBASIC18.17■□□□□ 0.5
CPNE4Q96A23 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.17■□□□□ 0.5
CPNE4Q96A23 C2orf69P4-201ENST00000565394 541 ntBASIC18.17■□□□□ 0.5
CPNE4Q96A23 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
CPNE4Q96A23 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.17■□□□□ 0.5
CPNE4Q96A23 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CPNE4Q96A23 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.17■□□□□ 0.5
CPNE4Q96A23 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CPNE4Q96A23 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.16■□□□□ 0.5
CPNE4Q96A23 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE4Q96A23 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE4Q96A23 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE4Q96A23 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE4Q96A23 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE4Q96A23 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE4Q96A23 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.15■□□□□ 0.5
CPNE4Q96A23 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.15■□□□□ 0.5
CPNE4Q96A23 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.15■□□□□ 0.5
CPNE4Q96A23 AC083880.1-201ENST00000608266 535 ntBASIC18.15■□□□□ 0.5
CPNE4Q96A23 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE4Q96A23 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.15■□□□□ 0.5
CPNE4Q96A23 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CPNE4Q96A23 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.15■□□□□ 0.5
CPNE4Q96A23 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CPNE4Q96A23 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
CPNE4Q96A23 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE4Q96A23 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE4Q96A23 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE4Q96A23 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE4Q96A23 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE4Q96A23 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CPNE4Q96A23 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 KRT18P6-201ENST00000555540 1265 ntBASIC18.14■□□□□ 0.49
CPNE4Q96A23 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms