Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HMGB4Q8WW32 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 KRT18P21-201ENST00000515767 1272 ntBASIC20.38■□□□□ 0.85
HMGB4Q8WW32 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
HMGB4Q8WW32 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 TSPY15P-201ENST00000457163 923 ntBASIC20.37■□□□□ 0.85
HMGB4Q8WW32 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 RARRES2P10-201ENST00000564312 460 ntBASIC20.37■□□□□ 0.85
HMGB4Q8WW32 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 AC011484.1-201ENST00000377652 1995 ntBASIC20.37■□□□□ 0.85
HMGB4Q8WW32 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.37■□□□□ 0.85
HMGB4Q8WW32 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 AC133561.5-201ENST00000635547 218 ntBASIC20.36■□□□□ 0.85
HMGB4Q8WW32 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC20.36■□□□□ 0.85
HMGB4Q8WW32 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.35■□□□□ 0.85
HMGB4Q8WW32 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.35■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms