Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.48■■□□□ 1.35
KRT40Q6A162 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT40Q6A162 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT40Q6A162 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT40Q6A162 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC23.48■■□□□ 1.35
KRT40Q6A162 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
KRT40Q6A162 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT40Q6A162 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
KRT40Q6A162 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT40Q6A162 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.48■■□□□ 1.35
KRT40Q6A162 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC23.48■■□□□ 1.35
KRT40Q6A162 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC23.48■■□□□ 1.35
KRT40Q6A162 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC23.47■■□□□ 1.35
KRT40Q6A162 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT40Q6A162 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.47■■□□□ 1.35
KRT40Q6A162 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT40Q6A162 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC23.47■■□□□ 1.35
KRT40Q6A162 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC23.47■■□□□ 1.35
KRT40Q6A162 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT40Q6A162 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.47■■□□□ 1.35
KRT40Q6A162 AC098934.4-201ENST00000564127 592 ntBASIC23.47■■□□□ 1.35
KRT40Q6A162 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC23.47■■□□□ 1.35
KRT40Q6A162 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.47■■□□□ 1.35
KRT40Q6A162 AC231657.2-201ENST00000624556 255 ntBASIC23.47■■□□□ 1.35
KRT40Q6A162 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 AC087633.2-202ENST00000565166 1439 ntBASIC23.47■■□□□ 1.35
KRT40Q6A162 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
KRT40Q6A162 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.47■■□□□ 1.35
KRT40Q6A162 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
KRT40Q6A162 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
KRT40Q6A162 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
KRT40Q6A162 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.46■■□□□ 1.35
KRT40Q6A162 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.46■■□□□ 1.35
KRT40Q6A162 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.46■■□□□ 1.35
KRT40Q6A162 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
KRT40Q6A162 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
KRT40Q6A162 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.46■■□□□ 1.35
KRT40Q6A162 AC007322.1-201ENST00000426983 750 ntBASIC23.46■■□□□ 1.35
KRT40Q6A162 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.46■■□□□ 1.35
KRT40Q6A162 CYP2T1P-201ENST00000432607 1285 ntBASIC23.46■■□□□ 1.35
KRT40Q6A162 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.46■■□□□ 1.35
KRT40Q6A162 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
KRT40Q6A162 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.46■■□□□ 1.35
KRT40Q6A162 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.46■■□□□ 1.35
KRT40Q6A162 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.46■■□□□ 1.35
KRT40Q6A162 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.46■■□□□ 1.35
KRT40Q6A162 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
KRT40Q6A162 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
KRT40Q6A162 AC005181.1-201ENST00000604782 1256 ntBASIC23.46■■□□□ 1.35
KRT40Q6A162 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
KRT40Q6A162 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.46■■□□□ 1.35
KRT40Q6A162 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
KRT40Q6A162 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
KRT40Q6A162 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.45■■□□□ 1.35
KRT40Q6A162 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.35
KRT40Q6A162 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
KRT40Q6A162 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
KRT40Q6A162 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
KRT40Q6A162 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
KRT40Q6A162 AL391422.3-201ENST00000603791 2761 ntBASIC23.45■■□□□ 1.34
KRT40Q6A162 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
KRT40Q6A162 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.45■■□□□ 1.34
KRT40Q6A162 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
KRT40Q6A162 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
KRT40Q6A162 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.45■■□□□ 1.34
KRT40Q6A162 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
KRT40Q6A162 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.44■■□□□ 1.34
KRT40Q6A162 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC23.44■■□□□ 1.34
KRT40Q6A162 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.44■■□□□ 1.34
KRT40Q6A162 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC23.44■■□□□ 1.34
KRT40Q6A162 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC23.44■■□□□ 1.34
KRT40Q6A162 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC23.44■■□□□ 1.34
KRT40Q6A162 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.44■■□□□ 1.34
KRT40Q6A162 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.44■■□□□ 1.34
KRT40Q6A162 AL356652.1-201ENST00000615962 565 ntBASIC23.44■■□□□ 1.34
KRT40Q6A162 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.44■■□□□ 1.34
KRT40Q6A162 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.44■■□□□ 1.34
KRT40Q6A162 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.44■■□□□ 1.34
KRT40Q6A162 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
KRT40Q6A162 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
KRT40Q6A162 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
KRT40Q6A162 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC23.43■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms