Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC25■■□□□ 1.59
CCDC88AQ3V6T2 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 SLC25A3P1-201ENST00000443844 931 ntBASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 AL117328.2-201ENST00000624617 1940 ntBASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
CCDC88AQ3V6T2 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 FAM197Y1-201ENST00000421178 764 ntBASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 CFL2-205ENST00000555765 632 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 USF2-205ENST00000594064 1179 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 DECR2-212ENST00000627716 352 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 TUB-203ENST00000534099 1759 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 GLDC-219ENST00000640208 420 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC24.98■■□□□ 1.59
CCDC88AQ3V6T2 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 DUX4L26-201ENST00000489078 1255 ntBASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC24.97■■□□□ 1.59
CCDC88AQ3V6T2 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 EXOC3-AS1-202ENST00000623673 1663 ntBASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 LINC01568-207ENST00000641790 1380 ntBASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
CCDC88AQ3V6T2 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC24.95■■□□□ 1.59
CCDC88AQ3V6T2 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 CYP2D8P-201ENST00000433633 1490 ntBASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 METTL23-204ENST00000586752 904 ntTSL 2 BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 AC073508.3-201ENST00000619697 1419 ntBASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
CCDC88AQ3V6T2 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 AL390719.1-204ENST00000412397 1219 ntBASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 PGM5P4-201ENST00000421970 445 ntBASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC24.94■■□□□ 1.58
CCDC88AQ3V6T2 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC24.94■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms