Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
PKNOX1P55347 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
PKNOX1P55347 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.83■□□□□ 0.76
PKNOX1P55347 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PKNOX1P55347 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PKNOX1P55347 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
PKNOX1P55347 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
PKNOX1P55347 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.82■□□□□ 0.76
PKNOX1P55347 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
PKNOX1P55347 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.82■□□□□ 0.76
PKNOX1P55347 KRT18P14-201ENST00000534205 1250 ntBASIC19.82■□□□□ 0.76
PKNOX1P55347 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.82■□□□□ 0.76
PKNOX1P55347 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.82■□□□□ 0.76
PKNOX1P55347 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.82■□□□□ 0.76
PKNOX1P55347 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.82■□□□□ 0.76
PKNOX1P55347 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
PKNOX1P55347 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 AL020996.1-203ENST00000536896 2307 ntBASIC19.82■□□□□ 0.76
PKNOX1P55347 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.82■□□□□ 0.76
PKNOX1P55347 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PKNOX1P55347 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PKNOX1P55347 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.81■□□□□ 0.76
PKNOX1P55347 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.81■□□□□ 0.76
PKNOX1P55347 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PKNOX1P55347 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.81■□□□□ 0.76
PKNOX1P55347 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.81■□□□□ 0.76
PKNOX1P55347 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.81■□□□□ 0.76
PKNOX1P55347 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC19.81■□□□□ 0.76
PKNOX1P55347 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 RBM17P2-201ENST00000616397 1405 ntBASIC19.81■□□□□ 0.76
PKNOX1P55347 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
PKNOX1P55347 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
PKNOX1P55347 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PKNOX1P55347 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PKNOX1P55347 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.81■□□□□ 0.76
PKNOX1P55347 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
PKNOX1P55347 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PKNOX1P55347 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX1P55347 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PKNOX1P55347 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.8■□□□□ 0.76
PKNOX1P55347 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 AC091799.1-201ENST00000422823 811 ntBASIC19.8■□□□□ 0.76
PKNOX1P55347 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX1P55347 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX1P55347 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.8■□□□□ 0.76
PKNOX1P55347 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX1P55347 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
PKNOX1P55347 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PKNOX1P55347 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX1P55347 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.8■□□□□ 0.76
PKNOX1P55347 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX1P55347 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX1P55347 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.79■□□□□ 0.76
PKNOX1P55347 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
PKNOX1P55347 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX1P55347 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX1P55347 AC004854.2-201ENST00000608450 1441 ntBASIC19.79■□□□□ 0.76
PKNOX1P55347 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
PKNOX1P55347 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC19.79■□□□□ 0.76
PKNOX1P55347 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC19.79■□□□□ 0.76
PKNOX1P55347 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.79■□□□□ 0.76
PKNOX1P55347 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
PKNOX1P55347 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PKNOX1P55347 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.79■□□□□ 0.76
PKNOX1P55347 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX1P55347 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PKNOX1P55347 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
PKNOX1P55347 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms