Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.37■□□□□ 0.85
CCNFP41002 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CCNFP41002 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
CCNFP41002 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCNFP41002 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.36■□□□□ 0.85
CCNFP41002 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.36■□□□□ 0.85
CCNFP41002 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
CCNFP41002 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
CCNFP41002 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 SLC7A5P2-201ENST00000553010 536 ntBASIC20.36■□□□□ 0.85
CCNFP41002 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.36■□□□□ 0.85
CCNFP41002 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.36■□□□□ 0.85
CCNFP41002 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.36■□□□□ 0.85
CCNFP41002 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CCNFP41002 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNFP41002 AC016769.1-201ENST00000409132 1010 ntBASIC20.35■□□□□ 0.85
CCNFP41002 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC20.35■□□□□ 0.85
CCNFP41002 UBE2DNL-204ENST00000602536 740 ntBASIC20.35■□□□□ 0.85
CCNFP41002 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNFP41002 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.35■□□□□ 0.85
CCNFP41002 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.35■□□□□ 0.85
CCNFP41002 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNFP41002 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.35■□□□□ 0.85
CCNFP41002 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CCNFP41002 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
CCNFP41002 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
CCNFP41002 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CCNFP41002 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CCNFP41002 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.34■□□□□ 0.85
CCNFP41002 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.34■□□□□ 0.85
CCNFP41002 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
CCNFP41002 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.34■□□□□ 0.85
CCNFP41002 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.34■□□□□ 0.85
CCNFP41002 MIR2861-201ENST00000636310 90 ntBASIC20.34■□□□□ 0.85
CCNFP41002 MYCNOS-205ENST00000641950 531 ntBASIC20.34■□□□□ 0.85
CCNFP41002 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.34■□□□□ 0.85
CCNFP41002 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.34■□□□□ 0.85
CCNFP41002 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.34■□□□□ 0.85
CCNFP41002 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.34■□□□□ 0.85
CCNFP41002 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CCNFP41002 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNFP41002 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CCNFP41002 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.33■□□□□ 0.85
CCNFP41002 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
CCNFP41002 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNFP41002 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CCNFP41002 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.33■□□□□ 0.85
CCNFP41002 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.33■□□□□ 0.85
CCNFP41002 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCNFP41002 AC245052.3-201ENST00000450182 901 ntBASIC20.33■□□□□ 0.85
CCNFP41002 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CCNFP41002 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.33■□□□□ 0.85
CCNFP41002 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
CCNFP41002 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.33■□□□□ 0.85
CCNFP41002 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.33■□□□□ 0.85
CCNFP41002 SMG8-203ENST00000578922 2178 ntBASIC20.33■□□□□ 0.85
CCNFP41002 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCNFP41002 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.33■□□□□ 0.84
CCNFP41002 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.33■□□□□ 0.84
CCNFP41002 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCNFP41002 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCNFP41002 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.33■□□□□ 0.84
CCNFP41002 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCNFP41002 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCNFP41002 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CCNFP41002 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC20.32■□□□□ 0.84
CCNFP41002 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.32■□□□□ 0.84
CCNFP41002 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNFP41002 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNFP41002 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNFP41002 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.32■□□□□ 0.84
CCNFP41002 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CCNFP41002 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms