Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL137060.1-201ENST00000618151 2648 ntBASIC17.15■□□□□ 0.34
USF1P22415 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC17.15■□□□□ 0.34
USF1P22415 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
USF1P22415 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 RN7SL471P-201ENST00000580476 299 ntBASIC17.15■□□□□ 0.34
USF1P22415 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC17.15■□□□□ 0.34
USF1P22415 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 AC116050.2-201ENST00000612102 1779 ntBASIC17.15■□□□□ 0.34
USF1P22415 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
USF1P22415 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
USF1P22415 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
USF1P22415 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
USF1P22415 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.34
USF1P22415 Z98882.1-201ENST00000622160 2253 ntBASIC17.14■□□□□ 0.33
USF1P22415 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
USF1P22415 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.14■□□□□ 0.33
USF1P22415 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.14■□□□□ 0.33
USF1P22415 AC105020.6-201ENST00000621523 1217 ntBASIC17.14■□□□□ 0.33
USF1P22415 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.14■□□□□ 0.33
USF1P22415 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC17.14■□□□□ 0.33
USF1P22415 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USF1P22415 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
USF1P22415 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC17.13■□□□□ 0.33
USF1P22415 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.13■□□□□ 0.33
USF1P22415 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.13■□□□□ 0.33
USF1P22415 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.13■□□□□ 0.33
USF1P22415 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.13■□□□□ 0.33
USF1P22415 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USF1P22415 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.13■□□□□ 0.33
USF1P22415 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC17.12■□□□□ 0.33
USF1P22415 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
USF1P22415 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.12■□□□□ 0.33
USF1P22415 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 AC069544.1-201ENST00000609399 999 ntBASIC17.12■□□□□ 0.33
USF1P22415 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USF1P22415 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.12■□□□□ 0.33
USF1P22415 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC17.11■□□□□ 0.33
USF1P22415 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC17.11■□□□□ 0.33
USF1P22415 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
USF1P22415 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms