Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC22.27■■□□□ 1.16
TPM1P09493 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
TPM1P09493 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TPM1P09493 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
TPM1P09493 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.27■■□□□ 1.16
TPM1P09493 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC22.27■■□□□ 1.16
TPM1P09493 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC22.27■■□□□ 1.16
TPM1P09493 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.27■■□□□ 1.16
TPM1P09493 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
TPM1P09493 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.27■■□□□ 1.16
TPM1P09493 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
TPM1P09493 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.27■■□□□ 1.16
TPM1P09493 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
TPM1P09493 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
TPM1P09493 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC22.26■■□□□ 1.15
TPM1P09493 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.26■■□□□ 1.15
TPM1P09493 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TPM1P09493 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TPM1P09493 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
TPM1P09493 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
TPM1P09493 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC22.26■■□□□ 1.15
TPM1P09493 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TPM1P09493 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TPM1P09493 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TPM1P09493 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
TPM1P09493 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
TPM1P09493 AC120498.10-201ENST00000621827 505 ntBASIC22.25■■□□□ 1.15
TPM1P09493 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC22.25■■□□□ 1.15
TPM1P09493 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
TPM1P09493 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.25■■□□□ 1.15
TPM1P09493 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
TPM1P09493 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
TPM1P09493 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC22.24■■□□□ 1.15
TPM1P09493 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.24■■□□□ 1.15
TPM1P09493 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC22.24■■□□□ 1.15
TPM1P09493 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC22.24■■□□□ 1.15
TPM1P09493 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC22.24■■□□□ 1.15
TPM1P09493 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
TPM1P09493 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM1P09493 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
TPM1P09493 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
TPM1P09493 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.23■■□□□ 1.15
TPM1P09493 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC22.23■■□□□ 1.15
TPM1P09493 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM1P09493 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC22.23■■□□□ 1.15
TPM1P09493 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC22.23■■□□□ 1.15
TPM1P09493 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC22.23■■□□□ 1.15
TPM1P09493 PBX2P1-201ENST00000493219 1291 ntBASIC22.23■■□□□ 1.15
TPM1P09493 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC22.23■■□□□ 1.15
TPM1P09493 CPT2-209ENST00000636935 803 ntTSL 5 BASIC22.23■■□□□ 1.15
TPM1P09493 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC22.23■■□□□ 1.15
TPM1P09493 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
TPM1P09493 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.22■■□□□ 1.15
TPM1P09493 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
TPM1P09493 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
TPM1P09493 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
TPM1P09493 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC22.22■■□□□ 1.15
TPM1P09493 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
TPM1P09493 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.22■■□□□ 1.15
TPM1P09493 AC012414.1-201ENST00000556676 535 ntBASIC22.22■■□□□ 1.15
TPM1P09493 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 RASA4CP-201ENST00000424092 1398 ntBASIC22.22■■□□□ 1.15
TPM1P09493 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC22.22■■□□□ 1.15
TPM1P09493 KRT16P2-201ENST00000414673 1423 ntBASIC22.22■■□□□ 1.15
TPM1P09493 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
TPM1P09493 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TPM1P09493 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
TPM1P09493 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
TPM1P09493 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
TPM1P09493 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TPM1P09493 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.21■■□□□ 1.15
TPM1P09493 EDA-201ENST00000338901 1233 ntBASIC22.21■■□□□ 1.15
TPM1P09493 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC22.21■■□□□ 1.15
TPM1P09493 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC22.21■■□□□ 1.15
TPM1P09493 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms