Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB3O15347 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB3O15347 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 AC099778.1-201ENST00000568593 1911 ntBASIC16.31■□□□□ 0.2
HMGB3O15347 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB3O15347 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 TFPT-201ENST00000391757 774 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB3O15347 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 AC087239.1-201ENST00000622671 572 ntBASIC16.31■□□□□ 0.2
HMGB3O15347 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HMGB3O15347 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGB3O15347 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 FP700111.2-201ENST00000619190 1892 ntBASIC16.31■□□□□ 0.2
HMGB3O15347 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB3O15347 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGB3O15347 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HMGB3O15347 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB3O15347 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB3O15347 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB3O15347 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HMGB3O15347 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB3O15347 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC16.3■□□□□ 0.2
HMGB3O15347 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB3O15347 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB3O15347 AC006455.2-201ENST00000429931 906 ntBASIC16.3■□□□□ 0.2
HMGB3O15347 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGB3O15347 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGB3O15347 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB3O15347 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGB3O15347 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB3O15347 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB3O15347 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB3O15347 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB3O15347 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB3O15347 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HMGB3O15347 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB3O15347 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
HMGB3O15347 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
HMGB3O15347 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HMGB3O15347 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 AC116562.4-201ENST00000641316 2276 ntBASIC16.29■□□□□ 0.2
HMGB3O15347 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 SMG8-203ENST00000578922 2178 ntBASIC16.29■□□□□ 0.2
HMGB3O15347 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB3O15347 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HMGB3O15347 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGB3O15347 AL034346.1-201ENST00000568244 1277 ntBASIC16.29■□□□□ 0.2
HMGB3O15347 AC068587.7-201ENST00000641602 218 ntBASIC16.29■□□□□ 0.2
HMGB3O15347 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGB3O15347 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGB3O15347 AC098818.2-201ENST00000564925 2320 ntBASIC16.29■□□□□ 0.2
HMGB3O15347 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB3O15347 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB3O15347 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB3O15347 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB3O15347 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
HMGB3O15347 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
HMGB3O15347 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB3O15347 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
HMGB3O15347 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 AC010141.3-201ENST00000456659 717 ntBASIC16.28■□□□□ 0.2
HMGB3O15347 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB3O15347 AL117332.1-201ENST00000622628 974 ntBASIC16.28■□□□□ 0.2
HMGB3O15347 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGB3O15347 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
HMGB3O15347 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
HMGB3O15347 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HMGB3O15347 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB3O15347 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB3O15347 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB3O15347 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB3O15347 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
HMGB3O15347 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms