Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
TRAV1-1A0A0B4J248 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 MTDHP2-201ENST00000601468 714 ntBASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC15.84■□□□□ 0.13
TRAV1-1A0A0B4J248 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC15.83■□□□□ 0.13
TRAV1-1A0A0B4J248 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 ATP5G2P3-201ENST00000429083 425 ntBASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 AP005435.1-201ENST00000529293 1178 ntBASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 MIR3181-201ENST00000578512 73 ntBASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 AC010525.1-201ENST00000585559 441 ntBASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV1-1A0A0B4J248 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 STK25-205ENST00000405883 1904 ntTSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 AC007613.1-201ENST00000572811 2597 ntBASIC15.82■□□□□ 0.12
TRAV1-1A0A0B4J248 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC15.81■□□□□ 0.12
TRAV1-1A0A0B4J248 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 9.5 ms