Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 ITM2C-210ENST00000620962 501 ntBASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC23.32■■□□□ 1.32
PCDHA1Q9Y5I3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 KRT18P29-201ENST00000397031 1267 ntBASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 OR2A1-AS1-207ENST00000486094 819 ntBASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 UNC93B4-201ENST00000505679 747 ntBASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 AC008403.3-201ENST00000598924 454 ntBASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
PCDHA1Q9Y5I3 AL137060.1-201ENST00000618151 2648 ntBASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 AC006058.3-201ENST00000606217 1069 ntBASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC23.3■■□□□ 1.32
PCDHA1Q9Y5I3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 SOX15-203ENST00000570788 1093 ntBASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 PALM-208ENST00000592155 2272 ntTSL 4 BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 AC007225.1-201ENST00000566331 1836 ntBASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
PCDHA1Q9Y5I3 MOK-233ENST00000524214 1539 ntTSL 2 BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.28■■□□□ 1.32
PCDHA1Q9Y5I3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 GGT1-206ENST00000404223 952 ntTSL 2 BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
PCDHA1Q9Y5I3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.31
PCDHA1Q9Y5I3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 PRORSD1P-201ENST00000295112 541 ntBASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 49 ms