Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC26.09■■□□□ 1.77
SMC4Q9NTJ3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 GCK-205ENST00000437084 1385 ntTSL 5 BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 KRT18P68-201ENST00000392293 1000 ntBASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 METTL15-202ENST00000403099 795 ntTSL 5 BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 PHB2-213ENST00000546111 858 ntTSL 2 BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
SMC4Q9NTJ3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC26.08■■□□□ 1.76
SMC4Q9NTJ3 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
SMC4Q9NTJ3 STK25-205ENST00000405883 1904 ntTSL 2 BASIC26.08■■□□□ 1.76
SMC4Q9NTJ3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 AC090192.1-201ENST00000517740 490 ntBASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 WT1-AS_3.1-201ENST00000613262 234 ntBASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 KRT17P1-201ENST00000399211 1546 ntBASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
SMC4Q9NTJ3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 AL512408.1-201ENST00000569378 2000 ntBASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 MKRN4P-201ENST00000444706 1521 ntBASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 ISCU-212ENST00000547005 795 ntTSL 3 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 OAS3-207ENST00000551007 998 ntTSL 2 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 AC105020.6-201ENST00000621523 1217 ntBASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 MARS-234ENST00000630571 216 ntTSL 5 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 MARS-235ENST00000630803 183 ntTSL 3 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC26.06■■□□□ 1.76
SMC4Q9NTJ3 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 AC083906.2-201ENST00000511578 360 ntBASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 AL121832.2-201ENST00000610979 668 ntBASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
SMC4Q9NTJ3 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 MAP2K4P1-201ENST00000438453 1195 ntBASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 TK2-208ENST00000545043 1120 ntTSL 2 BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
SMC4Q9NTJ3 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms