Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 AC142086.2-201ENST00000569753 217 ntBASIC20.93■□□□□ 0.94
USP29Q9HBJ7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.93■□□□□ 0.94
USP29Q9HBJ7 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 AC112907.3-201ENST00000577781 2400 ntBASIC20.92■□□□□ 0.94
USP29Q9HBJ7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.92■□□□□ 0.94
USP29Q9HBJ7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.92■□□□□ 0.94
USP29Q9HBJ7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP29Q9HBJ7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 DUX4L16-201ENST00000555130 1264 ntBASIC20.91■□□□□ 0.94
USP29Q9HBJ7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP29Q9HBJ7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 KRT8P36-201ENST00000489121 1440 ntBASIC20.9■□□□□ 0.94
USP29Q9HBJ7 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.9■□□□□ 0.94
USP29Q9HBJ7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP29Q9HBJ7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP29Q9HBJ7 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.94
USP29Q9HBJ7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP29Q9HBJ7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.89■□□□□ 0.94
USP29Q9HBJ7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP29Q9HBJ7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
USP29Q9HBJ7 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 TERF1P5-201ENST00000477545 1207 ntBASIC20.89■□□□□ 0.93
USP29Q9HBJ7 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 AC005181.1-201ENST00000604782 1256 ntBASIC20.89■□□□□ 0.93
USP29Q9HBJ7 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 PCDHAC2-203ENST00000615316 3011 ntBASIC20.89■□□□□ 0.93
USP29Q9HBJ7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.89■□□□□ 0.93
USP29Q9HBJ7 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
USP29Q9HBJ7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms