Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC17.67■□□□□ 0.42
NKX3-1Q99801 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
NKX3-1Q99801 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.66■□□□□ 0.42
NKX3-1Q99801 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
NKX3-1Q99801 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17.66■□□□□ 0.42
NKX3-1Q99801 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC17.66■□□□□ 0.42
NKX3-1Q99801 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.66■□□□□ 0.42
NKX3-1Q99801 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.66■□□□□ 0.42
NKX3-1Q99801 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.66■□□□□ 0.42
NKX3-1Q99801 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
NKX3-1Q99801 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
NKX3-1Q99801 AC092720.2-201ENST00000602388 1665 ntBASIC17.65■□□□□ 0.42
NKX3-1Q99801 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.65■□□□□ 0.42
NKX3-1Q99801 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC17.65■□□□□ 0.42
NKX3-1Q99801 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC17.65■□□□□ 0.42
NKX3-1Q99801 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC17.65■□□□□ 0.42
NKX3-1Q99801 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
NKX3-1Q99801 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
NKX3-1Q99801 TCF3P1-201ENST00000423021 1937 ntBASIC17.64■□□□□ 0.42
NKX3-1Q99801 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.64■□□□□ 0.42
NKX3-1Q99801 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 RARRES2P11-201ENST00000635158 484 ntBASIC17.64■□□□□ 0.41
NKX3-1Q99801 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 AL158211.5-201ENST00000623583 2518 ntBASIC17.64■□□□□ 0.41
NKX3-1Q99801 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
NKX3-1Q99801 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.64■□□□□ 0.41
NKX3-1Q99801 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 MCC-208ENST00000514701 2855 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.63■□□□□ 0.41
NKX3-1Q99801 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
NKX3-1Q99801 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NKX3-1Q99801 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms