Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AL121956.5-201ENST00000625261 221 ntBASIC21.52■■□□□ 1.04
CDX2Q99626 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.52■■□□□ 1.03
CDX2Q99626 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CDX2Q99626 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
CDX2Q99626 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
CDX2Q99626 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.51■■□□□ 1.03
CDX2Q99626 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CDX2Q99626 TSPY5P-201ENST00000426936 936 ntBASIC21.51■■□□□ 1.03
CDX2Q99626 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.51■■□□□ 1.03
CDX2Q99626 AC246785.2-201ENST00000432512 513 ntBASIC21.51■■□□□ 1.03
CDX2Q99626 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC21.51■■□□□ 1.03
CDX2Q99626 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC21.51■■□□□ 1.03
CDX2Q99626 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
CDX2Q99626 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.51■■□□□ 1.03
CDX2Q99626 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CDX2Q99626 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
CDX2Q99626 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 INGX-201ENST00000359239 846 ntBASIC21.5■■□□□ 1.03
CDX2Q99626 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.5■■□□□ 1.03
CDX2Q99626 TREX2-204ENST00000370212 861 ntTSL 5 BASIC21.5■■□□□ 1.03
CDX2Q99626 PRR31-201ENST00000371629 978 ntTSL 2 BASIC21.5■■□□□ 1.03
CDX2Q99626 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CDX2Q99626 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC21.5■■□□□ 1.03
CDX2Q99626 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
CDX2Q99626 PVRIG2P-201ENST00000435460 978 ntBASIC21.5■■□□□ 1.03
CDX2Q99626 AC092647.4-201ENST00000457211 535 ntBASIC21.5■■□□□ 1.03
CDX2Q99626 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.5■■□□□ 1.03
CDX2Q99626 PNN-205ENST00000556530 601 ntTSL 2 BASIC21.5■■□□□ 1.03
CDX2Q99626 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 IRF5-214ENST00000613821 595 ntTSL 5 BASIC21.5■■□□□ 1.03
CDX2Q99626 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC21.5■■□□□ 1.03
CDX2Q99626 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.5■■□□□ 1.03
CDX2Q99626 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CDX2Q99626 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC21.5■■□□□ 1.03
CDX2Q99626 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.49■■□□□ 1.03
CDX2Q99626 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC21.49■■□□□ 1.03
CDX2Q99626 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CDX2Q99626 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC21.49■■□□□ 1.03
CDX2Q99626 AC139530.1-201ENST00000575312 1977 ntBASIC21.49■■□□□ 1.03
CDX2Q99626 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDX2Q99626 AP000593.1-201ENST00000393668 712 ntBASIC21.49■■□□□ 1.03
CDX2Q99626 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDX2Q99626 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
CDX2Q99626 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDX2Q99626 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.49■■□□□ 1.03
CDX2Q99626 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDX2Q99626 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
CDX2Q99626 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDX2Q99626 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CDX2Q99626 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CDX2Q99626 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
CDX2Q99626 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.48■■□□□ 1.03
CDX2Q99626 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
CDX2Q99626 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 YBX1P2-201ENST00000489612 999 ntBASIC21.48■■□□□ 1.03
CDX2Q99626 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC21.48■■□□□ 1.03
CDX2Q99626 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CDX2Q99626 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC21.48■■□□□ 1.03
CDX2Q99626 AP005242.2-201ENST00000580065 1175 ntBASIC21.48■■□□□ 1.03
CDX2Q99626 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.48■■□□□ 1.03
CDX2Q99626 AL356652.1-201ENST00000615962 565 ntBASIC21.48■■□□□ 1.03
CDX2Q99626 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CDX2Q99626 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
CDX2Q99626 AC092053.2-201ENST00000640557 1818 ntBASIC21.48■■□□□ 1.03
CDX2Q99626 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CDX2Q99626 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC21.47■■□□□ 1.03
CDX2Q99626 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC21.47■■□□□ 1.03
CDX2Q99626 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDX2Q99626 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
CDX2Q99626 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CDX2Q99626 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.47■■□□□ 1.03
CDX2Q99626 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CDX2Q99626 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms