Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.33■■□□□ 1.17
CCDC40Q4G0X9 KRT18P5-201ENST00000436075 1291 ntBASIC22.33■■□□□ 1.17
CCDC40Q4G0X9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.33■■□□□ 1.17
CCDC40Q4G0X9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC22.33■■□□□ 1.17
CCDC40Q4G0X9 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
CCDC40Q4G0X9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC40Q4G0X9 AC010536.3-201ENST00000620306 533 ntBASIC22.33■■□□□ 1.17
CCDC40Q4G0X9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC40Q4G0X9 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
CCDC40Q4G0X9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC40Q4G0X9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC40Q4G0X9 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC40Q4G0X9 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC40Q4G0X9 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
CCDC40Q4G0X9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 TERF1P5-201ENST00000477545 1207 ntBASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC40Q4G0X9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 KRT18P11-201ENST00000435214 1283 ntBASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 RARRES2P6-201ENST00000567333 442 ntBASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 FAM21FP-204ENST00000608637 956 ntBASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 PCDHAC2-203ENST00000615316 3011 ntBASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
CCDC40Q4G0X9 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 AL162377.1-201ENST00000618844 1793 ntBASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 AC026271.2-201ENST00000428091 497 ntBASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC22.3■■□□□ 1.16
CCDC40Q4G0X9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 AC016769.1-201ENST00000409132 1010 ntBASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC22.29■■□□□ 1.16
CCDC40Q4G0X9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC22.28■■□□□ 1.16
CCDC40Q4G0X9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms