Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC18.17■□□□□ 0.5
H3F3AP84243 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.17■□□□□ 0.5
H3F3AP84243 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
H3F3AP84243 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.17■□□□□ 0.5
H3F3AP84243 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC18.17■□□□□ 0.5
H3F3AP84243 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC18.17■□□□□ 0.5
H3F3AP84243 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.17■□□□□ 0.5
H3F3AP84243 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC18.17■□□□□ 0.5
H3F3AP84243 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC18.17■□□□□ 0.5
H3F3AP84243 AC104771.1-201ENST00000603335 964 ntBASIC18.17■□□□□ 0.5
H3F3AP84243 AL109923.1-201ENST00000618799 583 ntBASIC18.17■□□□□ 0.5
H3F3AP84243 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.17■□□□□ 0.5
H3F3AP84243 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.17■□□□□ 0.5
H3F3AP84243 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.17■□□□□ 0.5
H3F3AP84243 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 AP005212.1-201ENST00000581547 1997 ntBASIC18.17■□□□□ 0.5
H3F3AP84243 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
H3F3AP84243 AC073314.1-201ENST00000568729 2216 ntBASIC18.17■□□□□ 0.5
H3F3AP84243 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
H3F3AP84243 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
H3F3AP84243 SLC29A4P1-201ENST00000398760 971 ntBASIC18.16■□□□□ 0.5
H3F3AP84243 BX276092.2-201ENST00000417668 665 ntBASIC18.16■□□□□ 0.5
H3F3AP84243 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.16■□□□□ 0.5
H3F3AP84243 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.16■□□□□ 0.5
H3F3AP84243 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.16■□□□□ 0.5
H3F3AP84243 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.16■□□□□ 0.5
H3F3AP84243 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
H3F3AP84243 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
H3F3AP84243 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC18.15■□□□□ 0.5
H3F3AP84243 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
H3F3AP84243 AC092118.2-201ENST00000613495 667 ntBASIC18.15■□□□□ 0.5
H3F3AP84243 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.15■□□□□ 0.5
H3F3AP84243 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
H3F3AP84243 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.15■□□□□ 0.5
H3F3AP84243 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
H3F3AP84243 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.15■□□□□ 0.5
H3F3AP84243 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
H3F3AP84243 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
H3F3AP84243 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC18.14■□□□□ 0.5
H3F3AP84243 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
H3F3AP84243 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.14■□□□□ 0.49
H3F3AP84243 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
H3F3AP84243 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
H3F3AP84243 ID1-201ENST00000376105 1233 ntBASIC18.14■□□□□ 0.49
H3F3AP84243 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC18.14■□□□□ 0.49
H3F3AP84243 LSM12P1-201ENST00000411836 588 ntBASIC18.14■□□□□ 0.49
H3F3AP84243 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC18.14■□□□□ 0.49
H3F3AP84243 AC142086.2-201ENST00000569753 217 ntBASIC18.14■□□□□ 0.49
H3F3AP84243 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
H3F3AP84243 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
H3F3AP84243 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.14■□□□□ 0.49
H3F3AP84243 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC18.14■□□□□ 0.49
H3F3AP84243 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.14■□□□□ 0.49
H3F3AP84243 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
H3F3AP84243 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.14■□□□□ 0.49
H3F3AP84243 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
H3F3AP84243 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms