Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC28.38■■■□□ 2.13
MSH6P52701 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC28.37■■■□□ 2.13
MSH6P52701 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC28.37■■■□□ 2.13
MSH6P52701 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC28.37■■■□□ 2.13
MSH6P52701 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC28.37■■■□□ 2.13
MSH6P52701 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC28.37■■■□□ 2.13
MSH6P52701 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC28.37■■■□□ 2.13
MSH6P52701 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC28.37■■■□□ 2.13
MSH6P52701 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC28.37■■■□□ 2.13
MSH6P52701 AC091076.1-201ENST00000610741 619 ntBASIC28.37■■■□□ 2.13
MSH6P52701 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
MSH6P52701 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
MSH6P52701 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
MSH6P52701 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC28.36■■■□□ 2.13
MSH6P52701 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC28.36■■■□□ 2.13
MSH6P52701 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC28.36■■■□□ 2.13
MSH6P52701 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC28.36■■■□□ 2.13
MSH6P52701 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
MSH6P52701 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
MSH6P52701 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC28.36■■■□□ 2.13
MSH6P52701 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
MSH6P52701 CLN6-221ENST00000637494 765 ntTSL 5 BASIC28.36■■■□□ 2.13
MSH6P52701 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
MSH6P52701 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
MSH6P52701 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
MSH6P52701 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC28.35■■■□□ 2.13
MSH6P52701 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC28.35■■■□□ 2.13
MSH6P52701 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
MSH6P52701 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
MSH6P52701 TREX2-204ENST00000370212 861 ntTSL 5 BASIC28.35■■■□□ 2.13
MSH6P52701 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
MSH6P52701 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC28.35■■■□□ 2.13
MSH6P52701 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC28.35■■■□□ 2.13
MSH6P52701 TOLLIP-AS1-201ENST00000530897 939 ntBASIC28.35■■■□□ 2.13
MSH6P52701 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC28.35■■■□□ 2.13
MSH6P52701 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC28.35■■■□□ 2.13
MSH6P52701 AC004264.1-201ENST00000608354 794 ntBASIC28.35■■■□□ 2.13
MSH6P52701 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC28.35■■■□□ 2.13
MSH6P52701 AL358472.4-201ENST00000633140 710 ntBASIC28.35■■■□□ 2.13
MSH6P52701 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
MSH6P52701 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
MSH6P52701 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
MSH6P52701 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC28.34■■■□□ 2.13
MSH6P52701 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
MSH6P52701 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC28.34■■■□□ 2.13
MSH6P52701 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC28.34■■■□□ 2.13
MSH6P52701 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC28.34■■■□□ 2.13
MSH6P52701 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC28.34■■■□□ 2.13
MSH6P52701 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC28.34■■■□□ 2.13
MSH6P52701 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
MSH6P52701 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC28.33■■■□□ 2.13
MSH6P52701 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.33■■■□□ 2.13
MSH6P52701 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC28.33■■■□□ 2.13
MSH6P52701 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 AC124283.5-201ENST00000624661 1809 ntBASIC28.33■■■□□ 2.13
MSH6P52701 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC28.33■■■□□ 2.13
MSH6P52701 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 AL121906.2-201ENST00000621597 723 ntBASIC28.33■■■□□ 2.13
MSH6P52701 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
MSH6P52701 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
MSH6P52701 LGALS8-AS1-201ENST00000487567 1457 ntBASIC28.33■■■□□ 2.13
MSH6P52701 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
MSH6P52701 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC28.32■■■□□ 2.12
MSH6P52701 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
MSH6P52701 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC28.32■■■□□ 2.12
MSH6P52701 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
MSH6P52701 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
MSH6P52701 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
MSH6P52701 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
MSH6P52701 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC28.32■■■□□ 2.12
MSH6P52701 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
MSH6P52701 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC28.32■■■□□ 2.12
MSH6P52701 LIN28AP1-201ENST00000429574 405 ntBASIC28.32■■■□□ 2.12
MSH6P52701 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms