Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 YGL024WYGL024W 336 nt2.21□□□□□ -2.06
UPF3P48412 HOP2YGL033W 657 nt2.21□□□□□ -2.06
UPF3P48412 YGL069CYGL069C 465 nt2.21□□□□□ -2.06
UPF3P48412 SSD1YDR293C 3753 nt2.21□□□□□ -2.06
UPF3P48412 NOT5YPR072W 1683 nt2.21□□□□□ -2.06
UPF3P48412 SPO22YIL073C 2928 nt2.21□□□□□ -2.06
UPF3P48412 RPH1YER169W 2391 nt2.2□□□□□ -2.06
UPF3P48412 YCR102W-AYCR102W-A 198 nt2.2□□□□□ -2.06
UPF3P48412 TEN1YLR010C 483 nt2.2□□□□□ -2.06
UPF3P48412 YLR053CYLR053C 327 nt2.2□□□□□ -2.06
UPF3P48412 SYH1YPL105C 2550 nt2.2□□□□□ -2.06
UPF3P48412 CAT2YML042W 2013 nt2.2□□□□□ -2.06
UPF3P48412 COX1Q0045 1605 nt2.2□□□□□ -2.06
UPF3P48412 VMR1YHL035C 4779 nt2.19□□□□□ -2.06
UPF3P48412 YOL098CYOL098C 3114 nt2.19□□□□□ -2.06
UPF3P48412 RPL37BYDR500C 267 nt2.19□□□□□ -2.06
UPF3P48412 YER121WYER121W 345 nt2.19□□□□□ -2.06
UPF3P48412 FCF2YLR051C 654 nt2.19□□□□□ -2.06
UPF3P48412 YLR222C-AYLR222C-A 231 nt2.19□□□□□ -2.06
UPF3P48412 SET2YJL168C 2202 nt2.19□□□□□ -2.06
UPF3P48412 COS111YBR203W 2775 nt2.18□□□□□ -2.06
UPF3P48412 UBP15YMR304W 3693 nt2.18□□□□□ -2.06
UPF3P48412 YJR098CYJR098C 1971 nt2.18□□□□□ -2.06
UPF3P48412 YLR149CYLR149C 2193 nt2.18□□□□□ -2.06
UPF3P48412 YDL062WYDL062W 426 nt2.18□□□□□ -2.06
UPF3P48412 BRP1YGL007W 378 nt2.18□□□□□ -2.06
UPF3P48412 YML084WYML084W 309 nt2.18□□□□□ -2.06
UPF3P48412 YPP1YGR198W 2454 nt2.18□□□□□ -2.06
UPF3P48412 IRC8YJL051W 2469 nt2.18□□□□□ -2.06
UPF3P48412 SLM1YIL105C 2061 nt2.18□□□□□ -2.06
UPF3P48412 NAB6YML117W 3405 nt2.17□□□□□ -2.06
UPF3P48412 YER076W-AYER076W-A 348 nt2.17□□□□□ -2.06
UPF3P48412 YLR101CYLR101C 396 nt2.17□□□□□ -2.06
UPF3P48412 YNL324WYNL324W 396 nt2.17□□□□□ -2.06
UPF3P48412 YPR146CYPR146C 330 nt2.17□□□□□ -2.06
UPF3P48412 TFC3YAL001C 3483 nt2.17□□□□□ -2.06
UPF3P48412 TOR2YKL203C 7425 nt2.17□□□□□ -2.06
UPF3P48412 RUF22RUF22 515 nt2.16□□□□□ -2.06
UPF3P48412 YBR032WYBR032W 303 nt2.16□□□□□ -2.06
UPF3P48412 YBR224WYBR224W 516 nt2.16□□□□□ -2.06
UPF3P48412 PEP3YLR148W 2757 nt2.16□□□□□ -2.06
UPF3P48412 MCD1YDL003W 1701 nt2.16□□□□□ -2.06
UPF3P48412 UBP1YDL122W 2430 nt2.16□□□□□ -2.06
UPF3P48412 DOT6YER088C 2013 nt2.15□□□□□ -2.06
UPF3P48412 YBR184WYBR184W 1572 nt2.15□□□□□ -2.06
UPF3P48412 HUR1YGL168W 333 nt2.15□□□□□ -2.07
UPF3P48412 HSK3YKL138C-A 210 nt2.15□□□□□ -2.07
UPF3P48412 YAL059C-AYAL059C-A 423 nt2.15□□□□□ -2.07
UPF3P48412 RPS22BYLR367W 393 nt2.15□□□□□ -2.07
UPF3P48412 PGA1YNL158W 597 nt2.15□□□□□ -2.07
UPF3P48412 ZRG8YER033C 3231 nt2.14□□□□□ -2.07
UPF3P48412 PAU14YIL176C 363 nt2.14□□□□□ -2.07
UPF3P48412 PAU1YJL223C 363 nt2.14□□□□□ -2.07
UPF3P48412 YJR157WYJR157W 363 nt2.14□□□□□ -2.07
UPF3P48412 CYB5YNL111C 363 nt2.14□□□□□ -2.07
UPF3P48412 YOR394C-AYOR394C-A 168 nt2.14□□□□□ -2.07
UPF3P48412 CDC24YAL041W 2565 nt2.14□□□□□ -2.07
UPF3P48412 NUP170YBL079W 4509 nt2.14□□□□□ -2.07
UPF3P48412 KOG1YHR186C 4674 nt2.14□□□□□ -2.07
UPF3P48412 INO80YGL150C 4470 nt2.14□□□□□ -2.07
UPF3P48412 SWT1YOR166C 1377 nt2.13□□□□□ -2.07
UPF3P48412 APL5YPL195W 2799 nt2.13□□□□□ -2.07
UPF3P48412 USO1YDL058W 5373 nt2.13□□□□□ -2.07
UPF3P48412 YCR087C-AYCR087C-A 462 nt2.13□□□□□ -2.07
UPF3P48412 YPR177CYPR177C 372 nt2.13□□□□□ -2.07
UPF3P48412 ELG1YOR144C 2376 nt2.13□□□□□ -2.07
UPF3P48412 MGA2YIR033W 3342 nt2.12□□□□□ -2.07
UPF3P48412 RBK1YCR036W 1002 nt2.12□□□□□ -2.07
UPF3P48412 YJL052C-AYJL052C-A 120 nt2.12□□□□□ -2.07
UPF3P48412 YLR264C-AYLR264C-A 117 nt2.12□□□□□ -2.07
UPF3P48412 TIF11YMR260C 462 nt2.12□□□□□ -2.07
UPF3P48412 YBL083CYBL083C 426 nt2.12□□□□□ -2.07
UPF3P48412 EGD1YPL037C 474 nt2.12□□□□□ -2.07
UPF3P48412 MYO4YAL029C 4416 nt2.12□□□□□ -2.07
UPF3P48412 LYS9YNR050C 1341 nt2.12□□□□□ -2.07
UPF3P48412 HCS1YKL017C 2052 nt2.11□□□□□ -2.07
UPF3P48412 VPS41YDR080W 2979 nt2.11□□□□□ -2.07
UPF3P48412 CHC1YGL206C 4962 nt2.11□□□□□ -2.07
UPF3P48412 YFL019CYFL019C 354 nt2.11□□□□□ -2.07
UPF3P48412 YKL202WYKL202W 582 nt2.11□□□□□ -2.07
UPF3P48412 TMA10YLR327C 261 nt2.11□□□□□ -2.07
UPF3P48412 ZEO1YOL109W 342 nt2.11□□□□□ -2.07
UPF3P48412 CDC33YOL139C 642 nt2.11□□□□□ -2.07
UPF3P48412 SAP190YKR028W 3102 nt2.11□□□□□ -2.07
UPF3P48412 GDS1YOR355W 1569 nt2.1□□□□□ -2.07
UPF3P48412 TFC8YPL007C 1767 nt2.1□□□□□ -2.07
UPF3P48412 SPP41YDR464W 4308 nt2.1□□□□□ -2.07
UPF3P48412 RPS24AYER074W 408 nt2.1□□□□□ -2.07
UPF3P48412 YHR139C-AYHR139C-A 312 nt2.1□□□□□ -2.07
UPF3P48412 BRE1YDL074C 2103 nt2.09□□□□□ -2.07
UPF3P48412 URM1YIL008W 300 nt2.09□□□□□ -2.07
UPF3P48412 TMA22YJR014W 597 nt2.09□□□□□ -2.07
UPF3P48412 PDR8YLR266C 2106 nt2.09□□□□□ -2.08
UPF3P48412 SLN1YIL147C 3663 nt2.09□□□□□ -2.08
UPF3P48412 SEF1YBL066C 3447 nt2.08□□□□□ -2.08
UPF3P48412 IRE1YHR079C 3348 nt2.08□□□□□ -2.08
UPF3P48412 NOP14YDL148C 2433 nt2.08□□□□□ -2.08
UPF3P48412 YCR043CYCR043C 384 nt2.08□□□□□ -2.08
UPF3P48412 RPL27BYDR471W 411 nt2.08□□□□□ -2.08
UPF3P48412 YHL009W-AYHL009W-A 1242 nt2.08□□□□□ -2.08
Retrieved 100 of 7,029 protein–RNA pairs in 65.8 ms