Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 TIM13YGR181W 318 nt3.44□□□□□ -1.86
MSH4P40965 YMR141W-AYMR141W-A 225 nt3.44□□□□□ -1.86
MSH4P40965 YMR172C-AYMR172C-A 384 nt3.44□□□□□ -1.86
MSH4P40965 YIL082W-AYIL082W-A 4497 nt3.44□□□□□ -1.86
MSH4P40965 DBP7YKR024C 2229 nt3.44□□□□□ -1.86
MSH4P40965 FLO1YAR050W 4614 nt3.44□□□□□ -1.86
MSH4P40965 BFA1YJR053W 1725 nt3.44□□□□□ -1.86
MSH4P40965 CDC24YAL041W 2565 nt3.44□□□□□ -1.86
MSH4P40965 NPR1YNL183C 2373 nt3.43□□□□□ -1.86
MSH4P40965 YKU70YMR284W 1809 nt3.43□□□□□ -1.86
MSH4P40965 RLF2YPR018W 1821 nt3.43□□□□□ -1.86
MSH4P40965 ECM5YMR176W 4236 nt3.43□□□□□ -1.86
MSH4P40965 LEU3YLR451W 2661 nt3.42□□□□□ -1.86
MSH4P40965 PAU2YEL049W 363 nt3.42□□□□□ -1.86
MSH4P40965 YJL135WYJL135W 318 nt3.42□□□□□ -1.86
MSH4P40965 YLR053CYLR053C 327 nt3.42□□□□□ -1.86
MSH4P40965 RPL20AYMR242C 519 nt3.42□□□□□ -1.86
MSH4P40965 YJL181WYJL181W 1836 nt3.42□□□□□ -1.86
MSH4P40965 SOK2YMR016C 2358 nt3.41□□□□□ -1.86
MSH4P40965 SPB1YCL054W 2526 nt3.41□□□□□ -1.86
MSH4P40965 AI2Q0055 2565 nt3.41□□□□□ -1.86
MSH4P40965 SOK1YDR006C 2706 nt3.41□□□□□ -1.86
MSH4P40965 YEL014CYEL014C 306 nt3.41□□□□□ -1.86
MSH4P40965 YHL005CYHL005C 393 nt3.41□□□□□ -1.86
MSH4P40965 CYB5YNL111C 363 nt3.41□□□□□ -1.86
MSH4P40965 INP52YNL106C 3552 nt3.41□□□□□ -1.86
MSH4P40965 GCD6YDR211W 2139 nt3.41□□□□□ -1.86
MSH4P40965 MSB2YGR014W 3921 nt3.41□□□□□ -1.86
MSH4P40965 NMD2YHR077C 3270 nt3.41□□□□□ -1.86
MSH4P40965 DNA2YHR164C 4569 nt3.41□□□□□ -1.86
MSH4P40965 TRM2YKR056W 1920 nt3.4□□□□□ -1.86
MSH4P40965 ROG1YGL144C 2058 nt3.4□□□□□ -1.86
MSH4P40965 GYP7YDL234C 2241 nt3.4□□□□□ -1.86
MSH4P40965 VPS64YDR200C 1815 nt3.4□□□□□ -1.86
MSH4P40965 HEH2YDR458C 1992 nt3.4□□□□□ -1.86
MSH4P40965 RPS17BYDR447C 411 nt3.4□□□□□ -1.87
MSH4P40965 YGL239CYGL239C 315 nt3.4□□□□□ -1.87
MSH4P40965 YPR146CYPR146C 330 nt3.4□□□□□ -1.87
MSH4P40965 SPO14YKR031C 5052 nt3.4□□□□□ -1.87
MSH4P40965 BRO1YPL084W 2535 nt3.4□□□□□ -1.87
MSH4P40965 TSC11YER093C 4293 nt3.4□□□□□ -1.87
MSH4P40965 BUB1YGR188C 3066 nt3.4□□□□□ -1.87
MSH4P40965 ECM25YJL201W 1800 nt3.4□□□□□ -1.87
MSH4P40965 YNL010WYNL010W 726 nt3.39□□□□□ -1.87
MSH4P40965 PUF6YDR496C 1971 nt3.39□□□□□ -1.87
MSH4P40965 SNQ2YDR011W 4506 nt3.39□□□□□ -1.87
MSH4P40965 IKI3YLR384C 4050 nt3.39□□□□□ -1.87
MSH4P40965 PSY2YNL201C 2577 nt3.38□□□□□ -1.87
MSH4P40965 YIL166CYIL166C 1629 nt3.38□□□□□ -1.87
MSH4P40965 FUN30YAL019W 3396 nt3.38□□□□□ -1.87
MSH4P40965 RPL36AYMR194W 303 nt3.38□□□□□ -1.87
MSH4P40965 snR48snR48 113 nt3.38□□□□□ -1.87
MSH4P40965 YIL169CYIL169C 2988 nt3.38□□□□□ -1.87
MSH4P40965 VPS55YJR044C 423 nt3.37□□□□□ -1.87
MSH4P40965 LCL2YLR104W 396 nt3.37□□□□□ -1.87
MSH4P40965 YLR140WYLR140W 327 nt3.37□□□□□ -1.87
MSH4P40965 TRM7YBR061C 933 nt3.37□□□□□ -1.87
MSH4P40965 UBP14YBR058C 2346 nt3.37□□□□□ -1.87
MSH4P40965 RAX2YLR084C 3663 nt3.37□□□□□ -1.87
MSH4P40965 STT4YLR305C 5703 nt3.37□□□□□ -1.87
MSH4P40965 YER121WYER121W 345 nt3.36□□□□□ -1.87
MSH4P40965 YHR086W-AYHR086W-A 162 nt3.36□□□□□ -1.87
MSH4P40965 NET1YJL076W 3570 nt3.36□□□□□ -1.87
MSH4P40965 snR60snR60 104 nt3.35□□□□□ -1.87
MSH4P40965 tF(GAA)QtF(GAA)Q 75 nt3.35□□□□□ -1.87
MSH4P40965 YGR164WYGR164W 336 nt3.35□□□□□ -1.87
MSH4P40965 YHL041WYHL041W 450 nt3.35□□□□□ -1.87
MSH4P40965 HHT1YBR010W 411 nt3.35□□□□□ -1.87
MSH4P40965 SAR1YPL218W 573 nt3.35□□□□□ -1.87
MSH4P40965 YPR063CYPR063C 423 nt3.35□□□□□ -1.87
MSH4P40965 YER189WYER189W 369 nt3.34□□□□□ -1.87
MSH4P40965 PUF4YGL014W 2667 nt3.34□□□□□ -1.88
MSH4P40965 NAB6YML117W 3405 nt3.33□□□□□ -1.88
MSH4P40965 SKT5YBL061C 2091 nt3.33□□□□□ -1.88
MSH4P40965 ITC1YGL133W 3795 nt3.33□□□□□ -1.88
MSH4P40965 FRE2YKL220C 2136 nt3.33□□□□□ -1.88
MSH4P40965 RPL6AYML073C 531 nt3.33□□□□□ -1.88
MSH4P40965 YBR178WYBR178W 375 nt3.33□□□□□ -1.88
MSH4P40965 ATG13YPR185W 2217 nt3.32□□□□□ -1.88
MSH4P40965 ESL1YIL151C 3357 nt3.32□□□□□ -1.88
MSH4P40965 ERP6YGL002W 651 nt3.32□□□□□ -1.88
MSH4P40965 PNC1YGL037C 651 nt3.32□□□□□ -1.88
MSH4P40965 OLI1Q0130 231 nt3.32□□□□□ -1.88
MSH4P40965 AYR1YIL124W 894 nt3.32□□□□□ -1.88
MSH4P40965 PRP8YHR165C 7242 nt3.31□□□□□ -1.88
MSH4P40965 YBR121C-AYBR121C-A 159 nt3.31□□□□□ -1.88
MSH4P40965 ILS1YBL076C 3219 nt3.31□□□□□ -1.88
MSH4P40965 MOT1YPL082C 5604 nt3.3□□□□□ -1.88
MSH4P40965 NPC2YDL046W 522 nt3.3□□□□□ -1.88
MSH4P40965 RPS27AYKL156W 249 nt3.3□□□□□ -1.88
MSH4P40965 YBL083CYBL083C 426 nt3.3□□□□□ -1.88
MSH4P40965 SSE1YPL106C 2082 nt3.3□□□□□ -1.88
MSH4P40965 PMR1YGL167C 2853 nt3.3□□□□□ -1.88
MSH4P40965 RSN1YMR266W 2862 nt3.3□□□□□ -1.88
MSH4P40965 DIS3YOL021C 3006 nt3.3□□□□□ -1.88
MSH4P40965 YGR250CYGR250C 2346 nt3.3□□□□□ -1.88
MSH4P40965 SRB8YCR081W 4284 nt3.3□□□□□ -1.88
MSH4P40965 SAP1YER047C 2694 nt3.29□□□□□ -1.88
MSH4P40965 RBK1YCR036W 1002 nt3.29□□□□□ -1.88
MSH4P40965 snR76snR76 109 nt3.29□□□□□ -1.88
Retrieved 100 of 7,029 protein–RNA pairs in 33.4 ms