Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.59■□□□□ 0.57
MSX1P28360 PRORSD1P-201ENST00000295112 541 ntBASIC18.59■□□□□ 0.57
MSX1P28360 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.59■□□□□ 0.57
MSX1P28360 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.59■□□□□ 0.57
MSX1P28360 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.59■□□□□ 0.57
MSX1P28360 AL356652.1-201ENST00000615962 565 ntBASIC18.59■□□□□ 0.57
MSX1P28360 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC18.59■□□□□ 0.57
MSX1P28360 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
MSX1P28360 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
MSX1P28360 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC18.59■□□□□ 0.57
MSX1P28360 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.59■□□□□ 0.57
MSX1P28360 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.58■□□□□ 0.57
MSX1P28360 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSX1P28360 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSX1P28360 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MSX1P28360 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.58■□□□□ 0.57
MSX1P28360 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
MSX1P28360 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSX1P28360 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.58■□□□□ 0.56
MSX1P28360 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSX1P28360 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MSX1P28360 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSX1P28360 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSX1P28360 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.58■□□□□ 0.56
MSX1P28360 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.58■□□□□ 0.56
MSX1P28360 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.58■□□□□ 0.56
MSX1P28360 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.58■□□□□ 0.56
MSX1P28360 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC18.58■□□□□ 0.56
MSX1P28360 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
MSX1P28360 AL589743.5-201ENST00000616611 1050 ntBASIC18.58■□□□□ 0.56
MSX1P28360 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.58■□□□□ 0.56
MSX1P28360 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSX1P28360 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
MSX1P28360 KRT8P36-201ENST00000489121 1440 ntBASIC18.57■□□□□ 0.56
MSX1P28360 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX1P28360 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX1P28360 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX1P28360 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX1P28360 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX1P28360 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.57■□□□□ 0.56
MSX1P28360 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC18.57■□□□□ 0.56
MSX1P28360 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
MSX1P28360 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.57■□□□□ 0.56
MSX1P28360 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.57■□□□□ 0.56
MSX1P28360 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
MSX1P28360 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX1P28360 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.57■□□□□ 0.56
MSX1P28360 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX1P28360 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
MSX1P28360 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX1P28360 FP700111.2-201ENST00000619190 1892 ntBASIC18.56■□□□□ 0.56
MSX1P28360 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.56■□□□□ 0.56
MSX1P28360 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC18.56■□□□□ 0.56
MSX1P28360 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC18.56■□□□□ 0.56
MSX1P28360 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX1P28360 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSX1P28360 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
MSX1P28360 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX1P28360 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
MSX1P28360 BX276092.2-201ENST00000417668 665 ntBASIC18.56■□□□□ 0.56
MSX1P28360 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC18.56■□□□□ 0.56
MSX1P28360 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
MSX1P28360 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX1P28360 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX1P28360 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX1P28360 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.56■□□□□ 0.56
MSX1P28360 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX1P28360 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX1P28360 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSX1P28360 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX1P28360 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX1P28360 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC18.55■□□□□ 0.56
MSX1P28360 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.55■□□□□ 0.56
MSX1P28360 AC083880.1-201ENST00000608266 535 ntBASIC18.55■□□□□ 0.56
MSX1P28360 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.55■□□□□ 0.56
MSX1P28360 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSX1P28360 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX1P28360 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSX1P28360 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX1P28360 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSX1P28360 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.54■□□□□ 0.56
MSX1P28360 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.54■□□□□ 0.56
MSX1P28360 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX1P28360 LSM12P1-201ENST00000411836 588 ntBASIC18.54■□□□□ 0.56
MSX1P28360 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.54■□□□□ 0.56
MSX1P28360 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.54■□□□□ 0.56
MSX1P28360 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.54■□□□□ 0.56
MSX1P28360 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms