Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC24■■□□□ 1.43
HMGB1P09429 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC24■■□□□ 1.43
HMGB1P09429 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC24■■□□□ 1.43
HMGB1P09429 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC24■■□□□ 1.43
HMGB1P09429 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC24■■□□□ 1.43
HMGB1P09429 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC24■■□□□ 1.43
HMGB1P09429 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC24■■□□□ 1.43
HMGB1P09429 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC23.99■■□□□ 1.43
HMGB1P09429 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
HMGB1P09429 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC23.99■■□□□ 1.43
HMGB1P09429 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC23.99■■□□□ 1.43
HMGB1P09429 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC23.99■■□□□ 1.43
HMGB1P09429 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
HMGB1P09429 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 AC004911.1-201ENST00000416316 871 ntBASIC23.99■■□□□ 1.43
HMGB1P09429 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC23.99■■□□□ 1.43
HMGB1P09429 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.99■■□□□ 1.43
HMGB1P09429 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC23.99■■□□□ 1.43
HMGB1P09429 AC005181.1-201ENST00000604782 1256 ntBASIC23.99■■□□□ 1.43
HMGB1P09429 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC23.99■■□□□ 1.43
HMGB1P09429 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.99■■□□□ 1.43
HMGB1P09429 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC23.99■■□□□ 1.43
HMGB1P09429 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC23.99■■□□□ 1.43
HMGB1P09429 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
HMGB1P09429 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC23.99■■□□□ 1.43
HMGB1P09429 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.98■■□□□ 1.43
HMGB1P09429 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC23.98■■□□□ 1.43
HMGB1P09429 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC23.98■■□□□ 1.43
HMGB1P09429 AL512625.2-201ENST00000417533 625 ntBASIC23.98■■□□□ 1.43
HMGB1P09429 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC23.98■■□□□ 1.43
HMGB1P09429 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 AC073111.5-205ENST00000641717 521 ntBASIC23.98■■□□□ 1.43
HMGB1P09429 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.98■■□□□ 1.43
HMGB1P09429 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC23.98■■□□□ 1.43
HMGB1P09429 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC23.98■■□□□ 1.43
HMGB1P09429 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC23.98■■□□□ 1.43
HMGB1P09429 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC23.98■■□□□ 1.43
HMGB1P09429 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
HMGB1P09429 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC23.97■■□□□ 1.43
HMGB1P09429 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC23.97■■□□□ 1.43
HMGB1P09429 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC23.97■■□□□ 1.43
HMGB1P09429 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC23.97■■□□□ 1.43
HMGB1P09429 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGB1P09429 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.96■■□□□ 1.43
HMGB1P09429 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGB1P09429 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGB1P09429 GCK-205ENST00000437084 1385 ntTSL 5 BASIC23.96■■□□□ 1.43
HMGB1P09429 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC23.96■■□□□ 1.43
HMGB1P09429 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGB1P09429 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGB1P09429 KRT18P68-201ENST00000392293 1000 ntBASIC23.96■■□□□ 1.43
HMGB1P09429 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.96■■□□□ 1.43
HMGB1P09429 CYP2T3P-201ENST00000601990 817 ntBASIC23.96■■□□□ 1.43
HMGB1P09429 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC23.96■■□□□ 1.43
HMGB1P09429 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGB1P09429 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC23.96■■□□□ 1.43
HMGB1P09429 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.95■■□□□ 1.43
HMGB1P09429 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC23.95■■□□□ 1.43
HMGB1P09429 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC23.95■■□□□ 1.43
HMGB1P09429 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC23.95■■□□□ 1.42
HMGB1P09429 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC23.95■■□□□ 1.42
HMGB1P09429 CDCA4P2-201ENST00000441182 718 ntBASIC23.95■■□□□ 1.42
HMGB1P09429 VPS53-216ENST00000574029 585 ntTSL 4 BASIC23.95■■□□□ 1.42
HMGB1P09429 AC133552.2-202ENST00000575694 574 ntBASIC23.95■■□□□ 1.42
HMGB1P09429 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC23.95■■□□□ 1.42
HMGB1P09429 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC23.95■■□□□ 1.42
HMGB1P09429 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.95■■□□□ 1.42
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms