Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CTDNEP1O95476 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CTDNEP1O95476 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
CTDNEP1O95476 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
CTDNEP1O95476 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
CTDNEP1O95476 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.62■■□□□ 1.37
CTDNEP1O95476 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CTDNEP1O95476 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTDNEP1O95476 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTDNEP1O95476 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTDNEP1O95476 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTDNEP1O95476 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 AFG3L1P-217ENST00000557444 2447 ntBASIC23.61■■□□□ 1.37
CTDNEP1O95476 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC23.61■■□□□ 1.37
CTDNEP1O95476 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTDNEP1O95476 DPP3P2-201ENST00000416030 1696 ntBASIC23.6■■□□□ 1.37
CTDNEP1O95476 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 H19-201ENST00000411754 1788 ntTSL 5 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 AC231657.2-201ENST00000624556 255 ntBASIC23.6■■□□□ 1.37
CTDNEP1O95476 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 STK25-205ENST00000405883 1904 ntTSL 2 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.6■■□□□ 1.37
CTDNEP1O95476 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTDNEP1O95476 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CTDNEP1O95476 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CTDNEP1O95476 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CTDNEP1O95476 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC23.59■■□□□ 1.37
CTDNEP1O95476 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CTDNEP1O95476 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC23.59■■□□□ 1.37
CTDNEP1O95476 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.59■■□□□ 1.37
CTDNEP1O95476 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CTDNEP1O95476 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC23.59■■□□□ 1.37
CTDNEP1O95476 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC23.59■■□□□ 1.37
CTDNEP1O95476 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CTDNEP1O95476 TCF3P1-201ENST00000423021 1937 ntBASIC23.59■■□□□ 1.37
CTDNEP1O95476 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC23.59■■□□□ 1.37
CTDNEP1O95476 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
CTDNEP1O95476 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CTDNEP1O95476 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CTDNEP1O95476 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.58■■□□□ 1.37
CTDNEP1O95476 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC23.58■■□□□ 1.37
CTDNEP1O95476 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CTDNEP1O95476 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CTDNEP1O95476 AC007322.1-201ENST00000426983 750 ntBASIC23.58■■□□□ 1.37
CTDNEP1O95476 CDCA4P2-201ENST00000441182 718 ntBASIC23.58■■□□□ 1.37
CTDNEP1O95476 AC100791.3-201ENST00000617619 330 ntBASIC23.58■■□□□ 1.37
CTDNEP1O95476 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CTDNEP1O95476 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC23.58■■□□□ 1.36
CTDNEP1O95476 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC23.58■■□□□ 1.36
CTDNEP1O95476 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CTDNEP1O95476 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
CTDNEP1O95476 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC23.58■■□□□ 1.36
CTDNEP1O95476 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC23.57■■□□□ 1.36
CTDNEP1O95476 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
CTDNEP1O95476 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CTDNEP1O95476 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.57■■□□□ 1.36
CTDNEP1O95476 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC23.57■■□□□ 1.36
CTDNEP1O95476 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.57■■□□□ 1.36
CTDNEP1O95476 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CTDNEP1O95476 AL355472.2-201ENST00000422958 438 ntBASIC23.57■■□□□ 1.36
CTDNEP1O95476 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CTDNEP1O95476 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC23.57■■□□□ 1.36
CTDNEP1O95476 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC23.57■■□□□ 1.36
CTDNEP1O95476 RAP2CP1-201ENST00000605103 478 ntBASIC23.57■■□□□ 1.36
CTDNEP1O95476 AC080038.1-201ENST00000611274 1154 ntBASIC23.57■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms