Protein–RNA interactions for Protein: O60232

SSSCA1, Sjoegren syndrome/scleroderma autoantigen 1, humanhuman

Predictions only

Length 199 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1O60232 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC16.54■□□□□ 0.24
SSSCA1O60232 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC16.54■□□□□ 0.24
SSSCA1O60232 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.54■□□□□ 0.24
SSSCA1O60232 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC16.54■□□□□ 0.24
SSSCA1O60232 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
SSSCA1O60232 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSSCA1O60232 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC16.54■□□□□ 0.24
SSSCA1O60232 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
SSSCA1O60232 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
SSSCA1O60232 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
SSSCA1O60232 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SSSCA1O60232 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC16.53■□□□□ 0.24
SSSCA1O60232 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC16.53■□□□□ 0.24
SSSCA1O60232 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SSSCA1O60232 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.53■□□□□ 0.24
SSSCA1O60232 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SSSCA1O60232 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 AC020763.4-201ENST00000623414 4170 ntBASIC16.53■□□□□ 0.24
SSSCA1O60232 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.53■□□□□ 0.24
SSSCA1O60232 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SSSCA1O60232 AC055733.4-201ENST00000638462 1354 ntBASIC16.52■□□□□ 0.24
SSSCA1O60232 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.52■□□□□ 0.24
SSSCA1O60232 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSSCA1O60232 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SSSCA1O60232 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
SSSCA1O60232 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSSCA1O60232 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SSSCA1O60232 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSSCA1O60232 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSSCA1O60232 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC16.52■□□□□ 0.24
SSSCA1O60232 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SSSCA1O60232 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SSSCA1O60232 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC16.52■□□□□ 0.24
SSSCA1O60232 DUX4L19-201ENST00000557448 1267 ntBASIC16.52■□□□□ 0.24
SSSCA1O60232 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC16.52■□□□□ 0.24
SSSCA1O60232 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SSSCA1O60232 AC011298.3-201ENST00000615796 283 ntBASIC16.52■□□□□ 0.24
SSSCA1O60232 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SSSCA1O60232 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SSSCA1O60232 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SSSCA1O60232 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
SSSCA1O60232 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSSCA1O60232 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSSCA1O60232 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SSSCA1O60232 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC16.52■□□□□ 0.23
SSSCA1O60232 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC16.52■□□□□ 0.23
SSSCA1O60232 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC16.52■□□□□ 0.23
SSSCA1O60232 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SSSCA1O60232 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSSCA1O60232 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SSSCA1O60232 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC16.52■□□□□ 0.23
SSSCA1O60232 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC16.52■□□□□ 0.23
SSSCA1O60232 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SSSCA1O60232 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SSSCA1O60232 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSSCA1O60232 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSSCA1O60232 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SSSCA1O60232 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSSCA1O60232 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC16.51■□□□□ 0.23
SSSCA1O60232 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC16.51■□□□□ 0.23
SSSCA1O60232 RNF146-206ENST00000480444 843 ntTSL 2 BASIC16.51■□□□□ 0.23
SSSCA1O60232 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC16.51■□□□□ 0.23
SSSCA1O60232 QDPR-206ENST00000508623 601 ntTSL 3 BASIC16.51■□□□□ 0.23
SSSCA1O60232 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SSSCA1O60232 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SSSCA1O60232 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC16.51■□□□□ 0.23
SSSCA1O60232 TNXA-203ENST00000507684 2038 ntBASIC16.51■□□□□ 0.23
SSSCA1O60232 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSSCA1O60232 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SSSCA1O60232 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSSCA1O60232 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSSCA1O60232 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SSSCA1O60232 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SSSCA1O60232 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSSCA1O60232 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSSCA1O60232 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC16.5■□□□□ 0.23
SSSCA1O60232 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
SSSCA1O60232 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSSCA1O60232 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
SSSCA1O60232 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSSCA1O60232 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC16.5■□□□□ 0.23
SSSCA1O60232 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC16.5■□□□□ 0.23
SSSCA1O60232 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC16.5■□□□□ 0.23
SSSCA1O60232 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
SSSCA1O60232 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms