Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
PROM1O43490 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PROM1O43490 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.28■□□□□ 0.68
PROM1O43490 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
PROM1O43490 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
PROM1O43490 KRT8P36-201ENST00000489121 1440 ntBASIC19.27■□□□□ 0.68
PROM1O43490 AC087633.2-202ENST00000565166 1439 ntBASIC19.27■□□□□ 0.68
PROM1O43490 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PROM1O43490 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PROM1O43490 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PROM1O43490 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
PROM1O43490 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.27■□□□□ 0.68
PROM1O43490 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
PROM1O43490 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.27■□□□□ 0.68
PROM1O43490 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.27■□□□□ 0.68
PROM1O43490 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.27■□□□□ 0.68
PROM1O43490 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
PROM1O43490 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PROM1O43490 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PROM1O43490 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PROM1O43490 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PROM1O43490 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
PROM1O43490 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PROM1O43490 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.27■□□□□ 0.67
PROM1O43490 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PROM1O43490 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.26■□□□□ 0.67
PROM1O43490 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PROM1O43490 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PROM1O43490 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.26■□□□□ 0.67
PROM1O43490 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PROM1O43490 MCRIP2P1-201ENST00000394346 511 ntBASIC19.26■□□□□ 0.67
PROM1O43490 AL512625.2-201ENST00000417533 625 ntBASIC19.26■□□□□ 0.67
PROM1O43490 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PROM1O43490 PGM5P4-201ENST00000421970 445 ntBASIC19.26■□□□□ 0.67
PROM1O43490 CROCCP5-201ENST00000436658 830 ntBASIC19.26■□□□□ 0.67
PROM1O43490 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PROM1O43490 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.26■□□□□ 0.67
PROM1O43490 AC133552.2-202ENST00000575694 574 ntBASIC19.26■□□□□ 0.67
PROM1O43490 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
PROM1O43490 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
PROM1O43490 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.26■□□□□ 0.67
PROM1O43490 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.26■□□□□ 0.67
PROM1O43490 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.26■□□□□ 0.67
PROM1O43490 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PROM1O43490 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.25■□□□□ 0.67
PROM1O43490 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PROM1O43490 LINC01006-201ENST00000333319 2292 ntBASIC19.25■□□□□ 0.67
PROM1O43490 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.25■□□□□ 0.67
PROM1O43490 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PROM1O43490 GABARAPL3-202ENST00000624044 1851 ntBASIC19.25■□□□□ 0.67
PROM1O43490 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PROM1O43490 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.25■□□□□ 0.67
PROM1O43490 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PROM1O43490 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PROM1O43490 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PROM1O43490 AL050303.2-201ENST00000619798 666 ntBASIC19.25■□□□□ 0.67
PROM1O43490 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PROM1O43490 AC020907.5-201ENST00000624372 1936 ntBASIC19.25■□□□□ 0.67
PROM1O43490 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.25■□□□□ 0.67
PROM1O43490 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
PROM1O43490 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PROM1O43490 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.25■□□□□ 0.67
PROM1O43490 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
PROM1O43490 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PROM1O43490 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PROM1O43490 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.24■□□□□ 0.67
PROM1O43490 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.24■□□□□ 0.67
PROM1O43490 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.24■□□□□ 0.67
PROM1O43490 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.24■□□□□ 0.67
PROM1O43490 AL356652.1-201ENST00000615962 565 ntBASIC19.24■□□□□ 0.67
PROM1O43490 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PROM1O43490 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
PROM1O43490 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PROM1O43490 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.24■□□□□ 0.67
PROM1O43490 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 AC010980.2-201ENST00000587099 1412 ntBASIC19.24■□□□□ 0.67
PROM1O43490 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PROM1O43490 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.23■□□□□ 0.67
PROM1O43490 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
PROM1O43490 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
PROM1O43490 MIR663A-201ENST00000385250 93 ntBASIC19.23■□□□□ 0.67
PROM1O43490 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.23■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms