Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.92■□□□□ 0.62
HMGN4O00479 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.92■□□□□ 0.62
HMGN4O00479 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
HMGN4O00479 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGN4O00479 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGN4O00479 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
HMGN4O00479 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGN4O00479 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.91■□□□□ 0.62
HMGN4O00479 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.91■□□□□ 0.62
HMGN4O00479 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
HMGN4O00479 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
HMGN4O00479 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGN4O00479 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
HMGN4O00479 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.9■□□□□ 0.62
HMGN4O00479 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.9■□□□□ 0.62
HMGN4O00479 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGN4O00479 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGN4O00479 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGN4O00479 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGN4O00479 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGN4O00479 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGN4O00479 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.9■□□□□ 0.62
HMGN4O00479 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
HMGN4O00479 AL591742.1-201ENST00000604433 565 ntBASIC18.9■□□□□ 0.62
HMGN4O00479 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.9■□□□□ 0.62
HMGN4O00479 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGN4O00479 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
HMGN4O00479 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
HMGN4O00479 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
HMGN4O00479 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.62
HMGN4O00479 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 DPP3P2-201ENST00000416030 1696 ntBASIC18.89■□□□□ 0.61
HMGN4O00479 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
HMGN4O00479 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.89■□□□□ 0.61
HMGN4O00479 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.89■□□□□ 0.61
HMGN4O00479 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
HMGN4O00479 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
HMGN4O00479 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC18.89■□□□□ 0.61
HMGN4O00479 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.89■□□□□ 0.61
HMGN4O00479 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
HMGN4O00479 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
HMGN4O00479 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
HMGN4O00479 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
HMGN4O00479 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGN4O00479 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.88■□□□□ 0.61
HMGN4O00479 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 KRT18P11-201ENST00000435214 1283 ntBASIC18.88■□□□□ 0.61
HMGN4O00479 KRT18P5-201ENST00000436075 1291 ntBASIC18.88■□□□□ 0.61
HMGN4O00479 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.88■□□□□ 0.61
HMGN4O00479 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGN4O00479 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
HMGN4O00479 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
HMGN4O00479 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGN4O00479 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGN4O00479 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGN4O00479 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.88■□□□□ 0.61
HMGN4O00479 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
HMGN4O00479 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGN4O00479 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.88■□□□□ 0.61
HMGN4O00479 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
HMGN4O00479 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.87■□□□□ 0.61
HMGN4O00479 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.87■□□□□ 0.61
HMGN4O00479 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.87■□□□□ 0.61
HMGN4O00479 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.87■□□□□ 0.61
HMGN4O00479 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
HMGN4O00479 AC007322.4-201ENST00000509611 723 ntBASIC18.87■□□□□ 0.61
HMGN4O00479 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC18.87■□□□□ 0.61
HMGN4O00479 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms