Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC35.57■■■■□ 3.28
CCDC88BA6NC98 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
CCDC88BA6NC98 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC35.57■■■■□ 3.28
CCDC88BA6NC98 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC35.57■■■■□ 3.28
CCDC88BA6NC98 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC35.56■■■■□ 3.28
CCDC88BA6NC98 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC35.56■■■■□ 3.28
CCDC88BA6NC98 KRT16P5-201ENST00000455284 522 ntBASIC35.56■■■■□ 3.28
CCDC88BA6NC98 RN7SL850P-201ENST00000579959 291 ntBASIC35.56■■■■□ 3.28
CCDC88BA6NC98 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC35.56■■■■□ 3.28
CCDC88BA6NC98 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC35.56■■■■□ 3.28
CCDC88BA6NC98 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC35.56■■■■□ 3.28
CCDC88BA6NC98 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC35.55■■■■□ 3.28
CCDC88BA6NC98 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 RPS15-203ENST00000586096 570 ntTSL 2 BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC35.54■■■■□ 3.28
CCDC88BA6NC98 HTR7P1-201ENST00000538670 1336 ntBASIC35.53■■■■□ 3.28
CCDC88BA6NC98 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC35.53■■■■□ 3.28
CCDC88BA6NC98 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC35.53■■■■□ 3.28
CCDC88BA6NC98 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
CCDC88BA6NC98 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC35.53■■■■□ 3.28
CCDC88BA6NC98 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC35.53■■■■□ 3.28
CCDC88BA6NC98 CD177P1-201ENST00000606252 935 ntBASIC35.53■■■■□ 3.28
CCDC88BA6NC98 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC35.53■■■■□ 3.28
CCDC88BA6NC98 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC35.53■■■■□ 3.28
CCDC88BA6NC98 AC011484.1-201ENST00000377652 1995 ntBASIC35.52■■■■□ 3.28
CCDC88BA6NC98 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 FDX2-207ENST00000494368 584 ntTSL 4 BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC35.52■■■■□ 3.28
CCDC88BA6NC98 KRT8P36-201ENST00000489121 1440 ntBASIC35.52■■■■□ 3.28
CCDC88BA6NC98 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC35.51■■■■□ 3.28
CCDC88BA6NC98 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC35.51■■■■□ 3.27
CCDC88BA6NC98 KRT8P9-201ENST00000558927 1449 ntBASIC35.51■■■■□ 3.27
CCDC88BA6NC98 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC35.51■■■■□ 3.27
CCDC88BA6NC98 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC35.51■■■■□ 3.27
CCDC88BA6NC98 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC35.51■■■■□ 3.27
CCDC88BA6NC98 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 F2R-202ENST00000505600 442 ntTSL 2 BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 MIR2861-201ENST00000636310 90 ntBASIC35.5■■■■□ 3.27
CCDC88BA6NC98 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 SRI-203ENST00000419179 1307 ntTSL 2 BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC35.5■■■■□ 3.27
CCDC88BA6NC98 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 AL445228.2-201ENST00000605589 952 ntBASIC35.49■■■■□ 3.27
CCDC88BA6NC98 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 DYM-203ENST00000442713 2147 ntTSL 2 BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC35.49■■■■□ 3.27
CCDC88BA6NC98 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC35.48■■■■□ 3.27
CCDC88BA6NC98 TREX2-204ENST00000370212 861 ntTSL 5 BASIC35.48■■■■□ 3.27
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms