Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
VPS4AQ9UN37 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 AC053503.5-201ENST00000601508 636 ntBASIC19.63■□□□□ 0.73
VPS4AQ9UN37 AC104187.1-201ENST00000607510 612 ntBASIC19.63■□□□□ 0.73
VPS4AQ9UN37 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VPS4AQ9UN37 GABARAPL3-202ENST00000624044 1851 ntBASIC19.62■□□□□ 0.73
VPS4AQ9UN37 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 POU5F1P3-201ENST00000428824 1078 ntBASIC19.62■□□□□ 0.73
VPS4AQ9UN37 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 AC073210.2-201ENST00000430369 194 ntBASIC19.62■□□□□ 0.73
VPS4AQ9UN37 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 EEF1DP3-203ENST00000566025 782 ntBASIC19.62■□□□□ 0.73
VPS4AQ9UN37 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 PCDHAC2-203ENST00000615316 3011 ntBASIC19.62■□□□□ 0.73
VPS4AQ9UN37 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VPS4AQ9UN37 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 ITM2C-210ENST00000620962 501 ntBASIC19.61■□□□□ 0.73
VPS4AQ9UN37 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 AL391422.3-201ENST00000603791 2761 ntBASIC19.61■□□□□ 0.73
VPS4AQ9UN37 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VPS4AQ9UN37 KRT87P-202ENST00000534226 1464 ntBASIC19.6■□□□□ 0.73
VPS4AQ9UN37 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 AC105036.2-201ENST00000569468 176 ntBASIC19.6■□□□□ 0.73
VPS4AQ9UN37 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 UBE2DNL-204ENST00000602536 740 ntBASIC19.6■□□□□ 0.73
VPS4AQ9UN37 AP005212.1-201ENST00000581547 1997 ntBASIC19.6■□□□□ 0.73
VPS4AQ9UN37 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.6■□□□□ 0.73
VPS4AQ9UN37 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 AP006294.2-201ENST00000641667 209 ntBASIC19.59■□□□□ 0.73
VPS4AQ9UN37 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
VPS4AQ9UN37 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms