Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 AL591742.1-201ENST00000604433 565 ntBASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.52■□□□□ 0.72
VPS29Q9UBQ0 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
VPS29Q9UBQ0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
VPS29Q9UBQ0 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 KRT18P5-201ENST00000436075 1291 ntBASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 AC137761.2-201ENST00000561729 223 ntBASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 AC145350.3-201ENST00000569033 163 ntBASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 AL391422.3-201ENST00000603791 2761 ntBASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 KRT8P36-201ENST00000489121 1440 ntBASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.51■□□□□ 0.71
VPS29Q9UBQ0 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 AC026271.2-201ENST00000428091 497 ntBASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
VPS29Q9UBQ0 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
VPS29Q9UBQ0 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 AL162412.1-201ENST00000567129 965 ntBASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 RARRES2P6-201ENST00000567333 442 ntBASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 AC013268.1-206ENST00000638368 961 ntBASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms