Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 PGM5P4-201ENST00000421970 445 ntBASIC19.32■□□□□ 0.68
SCN3AQ9NY46 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.32■□□□□ 0.68
SCN3AQ9NY46 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 CYP21A1P-202ENST00000354927 1481 ntBASIC19.32■□□□□ 0.68
SCN3AQ9NY46 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 MYC-209ENST00000641252 345 ntBASIC19.31■□□□□ 0.68
SCN3AQ9NY46 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SCN3AQ9NY46 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 KRT8P36-201ENST00000489121 1440 ntBASIC19.3■□□□□ 0.68
SCN3AQ9NY46 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SCN3AQ9NY46 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 BID-203ENST00000399765 1879 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 MIPEPP3-201ENST00000412105 444 ntBASIC19.29■□□□□ 0.68
SCN3AQ9NY46 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 LSM12P1-201ENST00000411836 588 ntBASIC19.29■□□□□ 0.68
SCN3AQ9NY46 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.29■□□□□ 0.68
SCN3AQ9NY46 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC19.28■□□□□ 0.68
SCN3AQ9NY46 AP005212.1-201ENST00000581547 1997 ntBASIC19.27■□□□□ 0.68
SCN3AQ9NY46 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms