Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 AC124016.1-201ENST00000609552 612 ntBASIC24.19■■□□□ 1.46
DDX4Q9NQI0 AL023875.1-201ENST00000640777 796 ntBASIC24.19■■□□□ 1.46
DDX4Q9NQI0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 TK2-204ENST00000525974 1178 ntTSL 2 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
DDX4Q9NQI0 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 ABHD17AP6-201ENST00000458502 1044 ntBASIC24.17■■□□□ 1.46
DDX4Q9NQI0 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
DDX4Q9NQI0 AL049796.1-201ENST00000565336 1766 ntBASIC24.16■■□□□ 1.46
DDX4Q9NQI0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 MIR2861-201ENST00000636310 90 ntBASIC24.16■■□□□ 1.46
DDX4Q9NQI0 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC24.16■■□□□ 1.46
DDX4Q9NQI0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 RER1-204ENST00000378518 522 ntTSL 3 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 MIR718-201ENST00000390190 70 ntBASIC24.15■■□□□ 1.46
DDX4Q9NQI0 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 HES2-206ENST00000489730 730 ntTSL 2 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 MIR4497-201ENST00000583208 89 ntBASIC24.15■■□□□ 1.46
DDX4Q9NQI0 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 KRT8P36-201ENST00000489121 1440 ntBASIC24.15■■□□□ 1.46
DDX4Q9NQI0 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
DDX4Q9NQI0 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC24.14■■□□□ 1.46
DDX4Q9NQI0 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC24.14■■□□□ 1.46
DDX4Q9NQI0 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
DDX4Q9NQI0 SNORA78-201ENST00000459373 127 ntBASIC24.14■■□□□ 1.45
DDX4Q9NQI0 AC133681.1-201ENST00000465482 601 ntBASIC24.14■■□□□ 1.45
DDX4Q9NQI0 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
DDX4Q9NQI0 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC24.14■■□□□ 1.45
DDX4Q9NQI0 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
DDX4Q9NQI0 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC24.14■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms