Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLIP3Q96DZ5 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CLIP3Q96DZ5 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.58■□□□□ 0.73
CLIP3Q96DZ5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLIP3Q96DZ5 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CLIP3Q96DZ5 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.58■□□□□ 0.73
CLIP3Q96DZ5 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC19.58■□□□□ 0.73
CLIP3Q96DZ5 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 POU5F1P3-201ENST00000428824 1078 ntBASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 AL589743.5-201ENST00000616611 1050 ntBASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.58■□□□□ 0.72
CLIP3Q96DZ5 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CLIP3Q96DZ5 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 AC244015.2-201ENST00000616358 1861 ntBASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CLIP3Q96DZ5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 KRT18P68-201ENST00000392293 1000 ntBASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 KRT18P29-201ENST00000397031 1267 ntBASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.55■□□□□ 0.72
CLIP3Q96DZ5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.54■□□□□ 0.72
CLIP3Q96DZ5 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms