Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 AL592295.1-201ENST00000400984 884 ntBASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 AC018755.3-202ENST00000596210 929 ntBASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLRN3Q8NCR9 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 HES4-202ENST00000428771 1040 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 RP9P-202ENST00000450133 1212 ntBASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 LINC01529-204ENST00000636474 1715 ntBASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN3Q8NCR9 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN3Q8NCR9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 AC009086.3-201ENST00000623486 1008 ntBASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 SRP68-213ENST00000629930 165 ntTSL 5 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 AP004607.7-201ENST00000527152 1677 ntBASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN3Q8NCR9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 BCL2-203ENST00000589955 5011 ntBASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 AC093536.1-201ENST00000569153 554 ntBASIC16.22■□□□□ 0.19
CLRN3Q8NCR9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms