Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
HDDC3Q8N4P3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDDC3Q8N4P3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 SNORA78-201ENST00000459373 127 ntBASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HDDC3Q8N4P3 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 RN7SL471P-201ENST00000580476 299 ntBASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDDC3Q8N4P3 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 AC211429.1-201ENST00000415277 523 ntBASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 LINC01023-201ENST00000606054 436 ntBASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HDDC3Q8N4P3 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 Z99916.2-201ENST00000604037 246 ntBASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.44■□□□□ 0.86
HDDC3Q8N4P3 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.43■□□□□ 0.86
HDDC3Q8N4P3 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms