Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC24.95■■□□□ 1.58
USP48Q86UV5 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USP48Q86UV5 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC24.95■■□□□ 1.58
USP48Q86UV5 AC091799.1-201ENST00000422823 811 ntBASIC24.95■■□□□ 1.58
USP48Q86UV5 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.58
USP48Q86UV5 SOX15-203ENST00000570788 1093 ntBASIC24.95■■□□□ 1.58
USP48Q86UV5 AC069544.1-201ENST00000609399 999 ntBASIC24.95■■□□□ 1.58
USP48Q86UV5 AL589743.5-201ENST00000616611 1050 ntBASIC24.95■■□□□ 1.58
USP48Q86UV5 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC24.95■■□□□ 1.58
USP48Q86UV5 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USP48Q86UV5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USP48Q86UV5 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC24.95■■□□□ 1.58
USP48Q86UV5 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC24.95■■□□□ 1.58
USP48Q86UV5 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC24.95■■□□□ 1.58
USP48Q86UV5 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
USP48Q86UV5 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC24.94■■□□□ 1.58
USP48Q86UV5 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC24.94■■□□□ 1.58
USP48Q86UV5 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
USP48Q86UV5 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC24.94■■□□□ 1.58
USP48Q86UV5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
USP48Q86UV5 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP48Q86UV5 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC24.94■■□□□ 1.58
USP48Q86UV5 MFF-205ENST00000354503 1085 ntTSL 2 BASIC24.94■■□□□ 1.58
USP48Q86UV5 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
USP48Q86UV5 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC24.94■■□□□ 1.58
USP48Q86UV5 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP48Q86UV5 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC24.94■■□□□ 1.58
USP48Q86UV5 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC24.94■■□□□ 1.58
USP48Q86UV5 TUB-203ENST00000534099 1759 ntTSL 2 BASIC24.94■■□□□ 1.58
USP48Q86UV5 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP48Q86UV5 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP48Q86UV5 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP48Q86UV5 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC24.94■■□□□ 1.58
USP48Q86UV5 AC073130.3-201ENST00000624389 2278 ntBASIC24.93■■□□□ 1.58
USP48Q86UV5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP48Q86UV5 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
USP48Q86UV5 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC24.93■■□□□ 1.58
USP48Q86UV5 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP48Q86UV5 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC24.93■■□□□ 1.58
USP48Q86UV5 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
USP48Q86UV5 ABHD17AP6-201ENST00000458502 1044 ntBASIC24.93■■□□□ 1.58
USP48Q86UV5 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC24.93■■□□□ 1.58
USP48Q86UV5 OR2A1-AS1-207ENST00000486094 819 ntBASIC24.93■■□□□ 1.58
USP48Q86UV5 SLC29A4P2-201ENST00000504749 1089 ntBASIC24.93■■□□□ 1.58
USP48Q86UV5 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC24.93■■□□□ 1.58
USP48Q86UV5 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC24.93■■□□□ 1.58
USP48Q86UV5 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC24.93■■□□□ 1.58
USP48Q86UV5 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC24.93■■□□□ 1.58
USP48Q86UV5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
USP48Q86UV5 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
USP48Q86UV5 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP48Q86UV5 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.93■■□□□ 1.58
USP48Q86UV5 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
USP48Q86UV5 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
USP48Q86UV5 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.92■■□□□ 1.58
USP48Q86UV5 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC24.92■■□□□ 1.58
USP48Q86UV5 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
USP48Q86UV5 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
USP48Q86UV5 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USP48Q86UV5 TSPY7P-201ENST00000431358 1114 ntBASIC24.92■■□□□ 1.58
USP48Q86UV5 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC24.92■■□□□ 1.58
USP48Q86UV5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC24.92■■□□□ 1.58
USP48Q86UV5 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC24.92■■□□□ 1.58
USP48Q86UV5 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC24.92■■□□□ 1.58
USP48Q86UV5 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
USP48Q86UV5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC24.92■■□□□ 1.58
USP48Q86UV5 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP48Q86UV5 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP48Q86UV5 FEM1AP4-201ENST00000443167 1987 ntBASIC24.91■■□□□ 1.58
USP48Q86UV5 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.91■■□□□ 1.58
USP48Q86UV5 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
USP48Q86UV5 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
USP48Q86UV5 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP48Q86UV5 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
USP48Q86UV5 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
USP48Q86UV5 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.91■■□□□ 1.58
USP48Q86UV5 REXO2-208ENST00000539754 791 ntTSL 2 BASIC24.91■■□□□ 1.58
USP48Q86UV5 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC24.91■■□□□ 1.58
USP48Q86UV5 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC24.91■■□□□ 1.58
USP48Q86UV5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC24.91■■□□□ 1.58
USP48Q86UV5 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
USP48Q86UV5 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP48Q86UV5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP48Q86UV5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
USP48Q86UV5 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC24.9■■□□□ 1.58
USP48Q86UV5 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
USP48Q86UV5 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
USP48Q86UV5 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP48Q86UV5 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC24.9■■□□□ 1.58
USP48Q86UV5 REXO2-216ENST00000544196 452 ntTSL 3 BASIC24.9■■□□□ 1.58
USP48Q86UV5 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC24.9■■□□□ 1.58
USP48Q86UV5 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC24.9■■□□□ 1.58
USP48Q86UV5 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
USP48Q86UV5 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
USP48Q86UV5 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC24.9■■□□□ 1.58
USP48Q86UV5 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP48Q86UV5 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC24.9■■□□□ 1.58
USP48Q86UV5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
USP48Q86UV5 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC24.9■■□□□ 1.58
USP48Q86UV5 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC24.89■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms