Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC12.78□□□□□ -0.36
LINC00643Q86TS7 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 AC125437.2-201ENST00000625180 2167 ntBASIC12.77□□□□□ -0.36
LINC00643Q86TS7 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
LINC00643Q86TS7 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 MIR6090-201ENST00000622481 60 ntBASIC12.77□□□□□ -0.37
LINC00643Q86TS7 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
LINC00643Q86TS7 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 TNRC18P3-201ENST00000441896 2691 ntBASIC12.76□□□□□ -0.37
LINC00643Q86TS7 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 BID-203ENST00000399765 1879 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 COMP-202ENST00000425807 2292 ntTSL 2 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
LINC00643Q86TS7 AC099398.1-201ENST00000567919 2776 ntBASIC12.75□□□□□ -0.37
LINC00643Q86TS7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.37
LINC00643Q86TS7 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC12.75□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms