Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
KRT28Q7Z3Y7 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.82■■■□□ 2.04
KRT28Q7Z3Y7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 EXOC3-AS1-202ENST00000623673 1663 ntBASIC27.81■■■□□ 2.04
KRT28Q7Z3Y7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 AC124283.5-201ENST00000624661 1809 ntBASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC27.8■■■□□ 2.04
KRT28Q7Z3Y7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 NUDT16P1-203ENST00000513809 620 ntBASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 AP000525.1-201ENST00000608286 694 ntBASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 REXO1L10P-201ENST00000615707 1290 ntBASIC27.79■■■□□ 2.04
KRT28Q7Z3Y7 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 RMI2-205ENST00000576027 818 ntTSL 2 BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC27.78■■■□□ 2.04
KRT28Q7Z3Y7 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 GLDC-219ENST00000640208 420 ntTSL 2 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC27.77■■■□□ 2.04
KRT28Q7Z3Y7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC27.76■■■□□ 2.04
KRT28Q7Z3Y7 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 UNC93B2-201ENST00000285383 730 ntBASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 KRT18P57-201ENST00000443599 1254 ntBASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 NME3-204ENST00000563498 920 ntTSL 2 BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC27.76■■■□□ 2.03
KRT28Q7Z3Y7 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 STK25-205ENST00000405883 1904 ntTSL 2 BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 MIR1238-201ENST00000408483 83 ntBASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 RNF146-204ENST00000476956 884 ntTSL 2 BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 DUT-205ENST00000558813 769 ntTSL 2 BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC27.75■■■□□ 2.03
KRT28Q7Z3Y7 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 LINC01568-207ENST00000641790 1380 ntBASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 AC113347.1-201ENST00000413321 391 ntBASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC27.74■■■□□ 2.03
KRT28Q7Z3Y7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC27.74■■■□□ 2.03
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms