Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 GUSBP6-202ENST00000438529 1198 ntBASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 AC006128.1-201ENST00000624704 1661 ntBASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.82■□□□□ 0.6
NUP54Q7Z3B4 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 PLK5-205ENST00000642079 1969 ntBASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 MIPEPP3-201ENST00000412105 444 ntBASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
NUP54Q7Z3B4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 BX276092.2-201ENST00000417668 665 ntBASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 AL355472.2-201ENST00000422958 438 ntBASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 AC087633.2-202ENST00000565166 1439 ntBASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
NUP54Q7Z3B4 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 MIR4758-201ENST00000577688 71 ntBASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 AL589743.5-201ENST00000616611 1050 ntBASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 MIR2861-201ENST00000636310 90 ntBASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
NUP54Q7Z3B4 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
NUP54Q7Z3B4 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms