Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 AC233263.1-201ENST00000578059 224 ntBASIC20.7■□□□□ 0.9
USP39Q53GS9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.7■□□□□ 0.9
USP39Q53GS9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.7■□□□□ 0.9
USP39Q53GS9 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.7■□□□□ 0.9
USP39Q53GS9 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP39Q53GS9 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.69■□□□□ 0.9
USP39Q53GS9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP39Q53GS9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USP39Q53GS9 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
USP39Q53GS9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.69■□□□□ 0.9
USP39Q53GS9 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP39Q53GS9 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.69■□□□□ 0.9
USP39Q53GS9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP39Q53GS9 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.69■□□□□ 0.9
USP39Q53GS9 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP39Q53GS9 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
USP39Q53GS9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP39Q53GS9 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP39Q53GS9 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP39Q53GS9 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.69■□□□□ 0.9
USP39Q53GS9 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP39Q53GS9 CYP21A1P-202ENST00000354927 1481 ntBASIC20.69■□□□□ 0.9
USP39Q53GS9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
USP39Q53GS9 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
USP39Q53GS9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
USP39Q53GS9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 AC244015.2-201ENST00000616358 1861 ntBASIC20.68■□□□□ 0.9
USP39Q53GS9 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
USP39Q53GS9 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
USP39Q53GS9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
USP39Q53GS9 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
USP39Q53GS9 AC105020.6-201ENST00000621523 1217 ntBASIC20.67■□□□□ 0.9
USP39Q53GS9 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.67■□□□□ 0.9
USP39Q53GS9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.67■□□□□ 0.9
USP39Q53GS9 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
USP39Q53GS9 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
USP39Q53GS9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.66■□□□□ 0.9
USP39Q53GS9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC20.66■□□□□ 0.9
USP39Q53GS9 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.66■□□□□ 0.9
USP39Q53GS9 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
USP39Q53GS9 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.66■□□□□ 0.9
USP39Q53GS9 AC211429.1-201ENST00000415277 523 ntBASIC20.66■□□□□ 0.9
USP39Q53GS9 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC20.66■□□□□ 0.9
USP39Q53GS9 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
USP39Q53GS9 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
USP39Q53GS9 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.66■□□□□ 0.9
USP39Q53GS9 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
USP39Q53GS9 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
USP39Q53GS9 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
USP39Q53GS9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.65■□□□□ 0.9
USP39Q53GS9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms