Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TSPY23P-201ENST00000440136 739 ntBASIC14.92□□□□□ -0.02
PRKDCP78527 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
PRKDCP78527 IRF5-214ENST00000613821 595 ntTSL 5 BASIC14.92□□□□□ -0.02
PRKDCP78527 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC14.92□□□□□ -0.02
PRKDCP78527 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC14.92□□□□□ -0.02
PRKDCP78527 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
PRKDCP78527 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 MESTP1-201ENST00000404287 994 ntBASIC14.91□□□□□ -0.02
PRKDCP78527 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC14.91□□□□□ -0.02
PRKDCP78527 AC139530.3-201ENST00000620344 690 ntBASIC14.91□□□□□ -0.02
PRKDCP78527 AL121956.5-201ENST00000625261 221 ntBASIC14.91□□□□□ -0.02
PRKDCP78527 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PRKDCP78527 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC14.91□□□□□ -0.02
PRKDCP78527 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC14.91□□□□□ -0.02
PRKDCP78527 AC116407.4-201ENST00000623319 1061 ntBASIC14.91□□□□□ -0.02
PRKDCP78527 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC14.91□□□□□ -0.02
PRKDCP78527 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PRKDCP78527 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.91□□□□□ -0.02
PRKDCP78527 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 TREX2-204ENST00000370212 861 ntTSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PRKDCP78527 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
PRKDCP78527 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC14.9□□□□□ -0.02
PRKDCP78527 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC14.9□□□□□ -0.02
PRKDCP78527 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC14.9□□□□□ -0.02
PRKDCP78527 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC14.9□□□□□ -0.02
PRKDCP78527 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 AC092068.2-201ENST00000590491 1708 ntBASIC14.9□□□□□ -0.02
PRKDCP78527 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 AP005242.2-201ENST00000580065 1175 ntBASIC14.9□□□□□ -0.02
PRKDCP78527 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC14.9□□□□□ -0.02
PRKDCP78527 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC14.9□□□□□ -0.02
PRKDCP78527 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC14.9□□□□□ -0.02
PRKDCP78527 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PRKDCP78527 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
PRKDCP78527 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
PRKDCP78527 LINC01124-201ENST00000409786 2117 ntBASIC14.89□□□□□ -0.03
PRKDCP78527 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.89□□□□□ -0.03
PRKDCP78527 F2R-202ENST00000505600 442 ntTSL 2 BASIC14.89□□□□□ -0.03
PRKDCP78527 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC14.89□□□□□ -0.03
PRKDCP78527 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC14.89□□□□□ -0.03
PRKDCP78527 AL138966.2-201ENST00000621997 464 ntBASIC14.89□□□□□ -0.03
PRKDCP78527 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC14.89□□□□□ -0.03
PRKDCP78527 RER1-204ENST00000378518 522 ntTSL 3 BASIC14.89□□□□□ -0.03
PRKDCP78527 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC14.89□□□□□ -0.03
PRKDCP78527 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC14.89□□□□□ -0.03
PRKDCP78527 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC14.89□□□□□ -0.03
PRKDCP78527 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 AC004264.1-201ENST00000608354 794 ntBASIC14.89□□□□□ -0.03
PRKDCP78527 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
PRKDCP78527 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
PRKDCP78527 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC14.88□□□□□ -0.03
PRKDCP78527 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC14.88□□□□□ -0.03
PRKDCP78527 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
PRKDCP78527 YBX1P2-201ENST00000489612 999 ntBASIC14.88□□□□□ -0.03
PRKDCP78527 LINC01238-205ENST00000567549 1107 ntBASIC14.88□□□□□ -0.03
PRKDCP78527 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC14.88□□□□□ -0.03
PRKDCP78527 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
PRKDCP78527 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms