Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL356652.1-201ENST00000615962 565 ntBASIC28.47■■■□□ 2.15
MSH6P52701 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
MSH6P52701 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
MSH6P52701 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
MSH6P52701 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC28.46■■■□□ 2.15
MSH6P52701 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
MSH6P52701 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC28.46■■■□□ 2.15
MSH6P52701 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
MSH6P52701 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
MSH6P52701 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC28.45■■■□□ 2.15
MSH6P52701 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC28.45■■■□□ 2.15
MSH6P52701 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
MSH6P52701 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC28.45■■■□□ 2.14
MSH6P52701 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC28.45■■■□□ 2.14
MSH6P52701 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC28.45■■■□□ 2.14
MSH6P52701 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC28.45■■■□□ 2.14
MSH6P52701 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC28.44■■■□□ 2.14
MSH6P52701 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC28.44■■■□□ 2.14
MSH6P52701 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC28.44■■■□□ 2.14
MSH6P52701 UPK3BP1-201ENST00000428678 509 ntBASIC28.44■■■□□ 2.14
MSH6P52701 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC28.44■■■□□ 2.14
MSH6P52701 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
MSH6P52701 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC28.44■■■□□ 2.14
MSH6P52701 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC28.44■■■□□ 2.14
MSH6P52701 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC28.44■■■□□ 2.14
MSH6P52701 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
MSH6P52701 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC28.43■■■□□ 2.14
MSH6P52701 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
MSH6P52701 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
MSH6P52701 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
MSH6P52701 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC28.43■■■□□ 2.14
MSH6P52701 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC28.43■■■□□ 2.14
MSH6P52701 AC006011.2-201ENST00000621313 1158 ntBASIC28.43■■■□□ 2.14
MSH6P52701 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC28.43■■■□□ 2.14
MSH6P52701 AC026471.6-201ENST00000622954 1905 ntBASIC28.43■■■□□ 2.14
MSH6P52701 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC28.43■■■□□ 2.14
MSH6P52701 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
MSH6P52701 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
MSH6P52701 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
MSH6P52701 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC28.43■■■□□ 2.14
MSH6P52701 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC28.43■■■□□ 2.14
MSH6P52701 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
MSH6P52701 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
MSH6P52701 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
MSH6P52701 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
MSH6P52701 AP002982.1-201ENST00000492365 877 ntBASIC28.42■■■□□ 2.14
MSH6P52701 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC28.42■■■□□ 2.14
MSH6P52701 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC28.42■■■□□ 2.14
MSH6P52701 AL121894.2-201ENST00000602977 491 ntBASIC28.42■■■□□ 2.14
MSH6P52701 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
MSH6P52701 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
MSH6P52701 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
MSH6P52701 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC28.41■■■□□ 2.14
MSH6P52701 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC28.41■■■□□ 2.14
MSH6P52701 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC28.41■■■□□ 2.14
MSH6P52701 AC010203.1-204ENST00000548782 407 ntBASIC28.41■■■□□ 2.14
MSH6P52701 METTL23-204ENST00000586752 904 ntTSL 2 BASIC28.41■■■□□ 2.14
MSH6P52701 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
MSH6P52701 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC28.41■■■□□ 2.14
MSH6P52701 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC28.41■■■□□ 2.14
MSH6P52701 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
MSH6P52701 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
MSH6P52701 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
MSH6P52701 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
MSH6P52701 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
MSH6P52701 F2R-202ENST00000505600 442 ntTSL 2 BASIC28.4■■■□□ 2.14
MSH6P52701 AC116562.2-201ENST00000507042 360 ntBASIC28.4■■■□□ 2.14
MSH6P52701 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC28.4■■■□□ 2.14
MSH6P52701 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC28.4■■■□□ 2.14
MSH6P52701 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC28.4■■■□□ 2.14
MSH6P52701 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC28.4■■■□□ 2.14
MSH6P52701 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC28.4■■■□□ 2.14
MSH6P52701 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC28.4■■■□□ 2.14
MSH6P52701 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
MSH6P52701 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
MSH6P52701 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
MSH6P52701 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC28.4■■■□□ 2.14
MSH6P52701 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
MSH6P52701 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
MSH6P52701 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC28.39■■■□□ 2.14
MSH6P52701 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
MSH6P52701 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC28.39■■■□□ 2.14
MSH6P52701 TPM4P1-201ENST00000436100 807 ntBASIC28.39■■■□□ 2.14
MSH6P52701 AC010542.4-201ENST00000563151 1910 ntBASIC28.39■■■□□ 2.14
MSH6P52701 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC28.39■■■□□ 2.14
MSH6P52701 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
MSH6P52701 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC28.39■■■□□ 2.14
MSH6P52701 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
MSH6P52701 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC28.39■■■□□ 2.14
MSH6P52701 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC28.39■■■□□ 2.14
MSH6P52701 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
MSH6P52701 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC28.39■■■□□ 2.14
MSH6P52701 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC28.38■■■□□ 2.13
MSH6P52701 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 NMU-205ENST00000511469 756 ntTSL 3 BASIC28.38■■■□□ 2.13
MSH6P52701 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
MSH6P52701 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
MSH6P52701 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC28.38■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms