Protein–RNA interactions for Protein: P49759

CLK1, Dual specificity protein kinase CLK1, humanhuman

Known RBP Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1P49759 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CLK1P49759 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CLK1P49759 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CLK1P49759 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.02■□□□□ 0.63
CLK1P49759 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
CLK1P49759 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CLK1P49759 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC19.02■□□□□ 0.63
CLK1P49759 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CLK1P49759 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CLK1P49759 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CLK1P49759 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLK1P49759 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLK1P49759 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.01■□□□□ 0.63
CLK1P49759 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
CLK1P49759 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLK1P49759 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CLK1P49759 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
CLK1P49759 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
CLK1P49759 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.01■□□□□ 0.63
CLK1P49759 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.01■□□□□ 0.63
CLK1P49759 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
CLK1P49759 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLK1P49759 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
CLK1P49759 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.01■□□□□ 0.63
CLK1P49759 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.01■□□□□ 0.63
CLK1P49759 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.01■□□□□ 0.63
CLK1P49759 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLK1P49759 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.01■□□□□ 0.63
CLK1P49759 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.01■□□□□ 0.63
CLK1P49759 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLK1P49759 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CLK1P49759 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 AL020996.1-203ENST00000536896 2307 ntBASIC19■□□□□ 0.63
CLK1P49759 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19■□□□□ 0.63
CLK1P49759 COX20-201ENST00000366528 568 ntTSL 2 BASIC19■□□□□ 0.63
CLK1P49759 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19■□□□□ 0.63
CLK1P49759 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC19■□□□□ 0.63
CLK1P49759 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19■□□□□ 0.63
CLK1P49759 AC138907.5-202ENST00000569484 235 ntBASIC19■□□□□ 0.63
CLK1P49759 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19■□□□□ 0.63
CLK1P49759 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19■□□□□ 0.63
CLK1P49759 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19■□□□□ 0.63
CLK1P49759 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19■□□□□ 0.63
CLK1P49759 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19■□□□□ 0.63
CLK1P49759 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CLK1P49759 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CLK1P49759 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
CLK1P49759 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.99■□□□□ 0.63
CLK1P49759 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 HCG11-201ENST00000411553 5696 ntBASIC18.99■□□□□ 0.63
CLK1P49759 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 POU5F1P4-201ENST00000413175 1085 ntBASIC18.99■□□□□ 0.63
CLK1P49759 AC026271.2-201ENST00000428091 497 ntBASIC18.99■□□□□ 0.63
CLK1P49759 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.99■□□□□ 0.63
CLK1P49759 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.99■□□□□ 0.63
CLK1P49759 DUX4L2-201ENST00000561772 1275 ntBASIC18.99■□□□□ 0.63
CLK1P49759 RARRES2P6-201ENST00000567333 442 ntBASIC18.99■□□□□ 0.63
CLK1P49759 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC18.99■□□□□ 0.63
CLK1P49759 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.99■□□□□ 0.63
CLK1P49759 DUX4L6-201ENST00000626483 1275 ntBASIC18.99■□□□□ 0.63
CLK1P49759 DUX4L1-201ENST00000627662 1275 ntBASIC18.99■□□□□ 0.63
CLK1P49759 DUX4L8-201ENST00000629013 1275 ntBASIC18.99■□□□□ 0.63
CLK1P49759 DUX4L3-201ENST00000630187 1275 ntBASIC18.99■□□□□ 0.63
CLK1P49759 DUX4L7-201ENST00000630678 1275 ntBASIC18.99■□□□□ 0.63
CLK1P49759 DUX4L5-201ENST00000630834 1275 ntBASIC18.99■□□□□ 0.63
CLK1P49759 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
CLK1P49759 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.99■□□□□ 0.63
CLK1P49759 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
CLK1P49759 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
CLK1P49759 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.98■□□□□ 0.63
CLK1P49759 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.98■□□□□ 0.63
CLK1P49759 AC073314.1-201ENST00000568729 2216 ntBASIC18.98■□□□□ 0.63
CLK1P49759 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
CLK1P49759 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.98■□□□□ 0.63
CLK1P49759 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
CLK1P49759 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms