Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC092667.1-201ENST00000434301 2586 ntBASIC21.21■□□□□ 0.99
PTPN9P43378 DET1-207ENST00000564406 2315 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN9P43378 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN9P43378 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.21■□□□□ 0.99
PTPN9P43378 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN9P43378 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN9P43378 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
PTPN9P43378 AF201337.1-201ENST00000520239 748 ntBASIC21.21■□□□□ 0.99
PTPN9P43378 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN9P43378 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.21■□□□□ 0.99
PTPN9P43378 AC105020.6-201ENST00000621523 1217 ntBASIC21.21■□□□□ 0.99
PTPN9P43378 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC21.21■□□□□ 0.99
PTPN9P43378 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PTPN9P43378 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
PTPN9P43378 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.99
PTPN9P43378 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN9P43378 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
PTPN9P43378 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.2■□□□□ 0.98
PTPN9P43378 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN9P43378 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN9P43378 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC21.2■□□□□ 0.98
PTPN9P43378 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.2■□□□□ 0.98
PTPN9P43378 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.2■□□□□ 0.98
PTPN9P43378 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
PTPN9P43378 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.2■□□□□ 0.98
PTPN9P43378 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PTPN9P43378 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
PTPN9P43378 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC21.2■□□□□ 0.98
PTPN9P43378 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PTPN9P43378 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.19■□□□□ 0.98
PTPN9P43378 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.19■□□□□ 0.98
PTPN9P43378 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.19■□□□□ 0.98
PTPN9P43378 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.19■□□□□ 0.98
PTPN9P43378 AL355472.2-201ENST00000422958 438 ntBASIC21.19■□□□□ 0.98
PTPN9P43378 AC006970.2-201ENST00000450065 779 ntBASIC21.19■□□□□ 0.98
PTPN9P43378 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.19■□□□□ 0.98
PTPN9P43378 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 AC105036.2-201ENST00000569468 176 ntBASIC21.19■□□□□ 0.98
PTPN9P43378 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
PTPN9P43378 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.19■□□□□ 0.98
PTPN9P43378 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.19■□□□□ 0.98
PTPN9P43378 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
PTPN9P43378 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PTPN9P43378 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.18■□□□□ 0.98
PTPN9P43378 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.18■□□□□ 0.98
PTPN9P43378 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.18■□□□□ 0.98
PTPN9P43378 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.18■□□□□ 0.98
PTPN9P43378 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
PTPN9P43378 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PTPN9P43378 AL162377.1-201ENST00000618844 1793 ntBASIC21.18■□□□□ 0.98
PTPN9P43378 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.17■□□□□ 0.98
PTPN9P43378 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN9P43378 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.17■□□□□ 0.98
PTPN9P43378 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN9P43378 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
PTPN9P43378 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.17■□□□□ 0.98
PTPN9P43378 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
PTPN9P43378 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.17■□□□□ 0.98
PTPN9P43378 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC21.17■□□□□ 0.98
PTPN9P43378 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN9P43378 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.17■□□□□ 0.98
PTPN9P43378 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN9P43378 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN9P43378 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
PTPN9P43378 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PTPN9P43378 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN9P43378 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.16■□□□□ 0.98
PTPN9P43378 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.16■□□□□ 0.98
PTPN9P43378 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PTPN9P43378 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms