Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.84■□□□□ 0.45
COL8A1P27658 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.84■□□□□ 0.45
COL8A1P27658 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC17.84■□□□□ 0.45
COL8A1P27658 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC17.84■□□□□ 0.45
COL8A1P27658 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.84■□□□□ 0.45
COL8A1P27658 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.84■□□□□ 0.45
COL8A1P27658 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.84■□□□□ 0.45
COL8A1P27658 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
COL8A1P27658 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC17.84■□□□□ 0.45
COL8A1P27658 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL8A1P27658 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL8A1P27658 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.83■□□□□ 0.45
COL8A1P27658 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL8A1P27658 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL8A1P27658 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL8A1P27658 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL8A1P27658 AC137767.1-201ENST00000602918 1920 ntBASIC17.83■□□□□ 0.44
COL8A1P27658 UNC93B2-201ENST00000285383 730 ntBASIC17.83■□□□□ 0.44
COL8A1P27658 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.83■□□□□ 0.44
COL8A1P27658 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.83■□□□□ 0.44
COL8A1P27658 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.83■□□□□ 0.44
COL8A1P27658 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
COL8A1P27658 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL8A1P27658 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL8A1P27658 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC17.82■□□□□ 0.44
COL8A1P27658 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.82■□□□□ 0.44
COL8A1P27658 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.82■□□□□ 0.44
COL8A1P27658 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 KRT18P22-201ENST00000402024 1347 ntBASIC17.82■□□□□ 0.44
COL8A1P27658 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
COL8A1P27658 SLC25A3P1-201ENST00000443844 931 ntBASIC17.82■□□□□ 0.44
COL8A1P27658 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.82■□□□□ 0.44
COL8A1P27658 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.82■□□□□ 0.44
COL8A1P27658 NAPSB-206ENST00000562112 1266 ntBASIC17.82■□□□□ 0.44
COL8A1P27658 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 AL031963.3-201ENST00000606441 850 ntBASIC17.82■□□□□ 0.44
COL8A1P27658 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
COL8A1P27658 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.82■□□□□ 0.44
COL8A1P27658 REXO1L10P-201ENST00000615707 1290 ntBASIC17.82■□□□□ 0.44
COL8A1P27658 GLDC-219ENST00000640208 420 ntTSL 2 BASIC17.82■□□□□ 0.44
COL8A1P27658 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
COL8A1P27658 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.82■□□□□ 0.44
COL8A1P27658 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL8A1P27658 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL8A1P27658 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.81■□□□□ 0.44
COL8A1P27658 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL8A1P27658 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL8A1P27658 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.81■□□□□ 0.44
COL8A1P27658 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.81■□□□□ 0.44
COL8A1P27658 PTPA-214ENST00000423100 988 ntTSL 2 BASIC17.81■□□□□ 0.44
COL8A1P27658 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.81■□□□□ 0.44
COL8A1P27658 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL8A1P27658 KRT18P56-201ENST00000507275 550 ntBASIC17.81■□□□□ 0.44
COL8A1P27658 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.81■□□□□ 0.44
COL8A1P27658 KRT126P-201ENST00000549467 1181 ntBASIC17.81■□□□□ 0.44
COL8A1P27658 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC17.81■□□□□ 0.44
COL8A1P27658 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.81■□□□□ 0.44
COL8A1P27658 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.81■□□□□ 0.44
COL8A1P27658 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL8A1P27658 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC17.81■□□□□ 0.44
COL8A1P27658 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
COL8A1P27658 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL8A1P27658 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL8A1P27658 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 AC010947.1-201ENST00000623454 693 ntBASIC17.8■□□□□ 0.44
COL8A1P27658 AL358472.4-201ENST00000633140 710 ntBASIC17.8■□□□□ 0.44
COL8A1P27658 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL8A1P27658 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC17.79■□□□□ 0.44
COL8A1P27658 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC17.79■□□□□ 0.44
COL8A1P27658 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL8A1P27658 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.79■□□□□ 0.44
COL8A1P27658 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
COL8A1P27658 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC17.79■□□□□ 0.44
COL8A1P27658 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC17.79■□□□□ 0.44
COL8A1P27658 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms