Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
BDNFP23560 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.5■■□□□ 1.03
BDNFP23560 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
BDNFP23560 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BDNFP23560 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BDNFP23560 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
BDNFP23560 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.5■■□□□ 1.03
BDNFP23560 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
BDNFP23560 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.5■■□□□ 1.03
BDNFP23560 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.5■■□□□ 1.03
BDNFP23560 ESRRAP1-201ENST00000400596 1257 ntBASIC21.5■■□□□ 1.03
BDNFP23560 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
BDNFP23560 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.5■■□□□ 1.03
BDNFP23560 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BDNFP23560 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.5■■□□□ 1.03
BDNFP23560 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
BDNFP23560 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.5■■□□□ 1.03
BDNFP23560 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
BDNFP23560 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
BDNFP23560 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
BDNFP23560 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
BDNFP23560 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
BDNFP23560 AC092368.3-202ENST00000574180 1591 ntBASIC21.49■■□□□ 1.03
BDNFP23560 KRT8P36-201ENST00000489121 1440 ntBASIC21.49■■□□□ 1.03
BDNFP23560 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.49■■□□□ 1.03
BDNFP23560 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.49■■□□□ 1.03
BDNFP23560 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BDNFP23560 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BDNFP23560 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
BDNFP23560 PNMA6B-201ENST00000538162 1200 ntBASIC21.49■■□□□ 1.03
BDNFP23560 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BDNFP23560 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
BDNFP23560 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.49■■□□□ 1.03
BDNFP23560 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
BDNFP23560 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
BDNFP23560 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
BDNFP23560 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.49■■□□□ 1.03
BDNFP23560 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.49■■□□□ 1.03
BDNFP23560 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BDNFP23560 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
BDNFP23560 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
BDNFP23560 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC21.48■■□□□ 1.03
BDNFP23560 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.48■■□□□ 1.03
BDNFP23560 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.48■■□□□ 1.03
BDNFP23560 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.48■■□□□ 1.03
BDNFP23560 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
BDNFP23560 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
BDNFP23560 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BDNFP23560 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
BDNFP23560 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BDNFP23560 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
BDNFP23560 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.47■■□□□ 1.03
BDNFP23560 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.47■■□□□ 1.03
BDNFP23560 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BDNFP23560 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC21.47■■□□□ 1.03
BDNFP23560 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
BDNFP23560 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BDNFP23560 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
BDNFP23560 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.46■■□□□ 1.03
BDNFP23560 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.46■■□□□ 1.03
BDNFP23560 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.46■■□□□ 1.03
BDNFP23560 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.46■■□□□ 1.03
BDNFP23560 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.46■■□□□ 1.03
BDNFP23560 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.46■■□□□ 1.03
BDNFP23560 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 AC006128.1-201ENST00000624704 1661 ntBASIC21.46■■□□□ 1.03
BDNFP23560 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC21.46■■□□□ 1.03
BDNFP23560 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
BDNFP23560 AL121603.2-201ENST00000557373 2117 ntBASIC21.46■■□□□ 1.03
BDNFP23560 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
BDNFP23560 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
BDNFP23560 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
BDNFP23560 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BDNFP23560 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BDNFP23560 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
BDNFP23560 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.45■■□□□ 1.02
BDNFP23560 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.45■■□□□ 1.02
BDNFP23560 AC026366.1-201ENST00000488803 879 ntBASIC21.45■■□□□ 1.02
BDNFP23560 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21.45■■□□□ 1.02
BDNFP23560 ADM-205ENST00000528544 586 ntTSL 2 BASIC21.45■■□□□ 1.02
BDNFP23560 AP003097.1-201ENST00000530657 1135 ntBASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms