Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.27■□□□□ 0.84
XRCC1P18887 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC1P18887 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC1P18887 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC1P18887 AL049796.1-201ENST00000565336 1766 ntBASIC20.27■□□□□ 0.84
XRCC1P18887 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC1P18887 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.27■□□□□ 0.84
XRCC1P18887 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.27■□□□□ 0.84
XRCC1P18887 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC1P18887 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.27■□□□□ 0.84
XRCC1P18887 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.27■□□□□ 0.84
XRCC1P18887 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.27■□□□□ 0.84
XRCC1P18887 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
XRCC1P18887 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.83
XRCC1P18887 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.27■□□□□ 0.83
XRCC1P18887 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC1P18887 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.26■□□□□ 0.83
XRCC1P18887 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC1P18887 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC1P18887 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
XRCC1P18887 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
XRCC1P18887 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.26■□□□□ 0.83
XRCC1P18887 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.26■□□□□ 0.83
XRCC1P18887 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.26■□□□□ 0.83
XRCC1P18887 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
XRCC1P18887 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
XRCC1P18887 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC1P18887 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.26■□□□□ 0.83
XRCC1P18887 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
XRCC1P18887 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC1P18887 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.26■□□□□ 0.83
XRCC1P18887 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.26■□□□□ 0.83
XRCC1P18887 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC1P18887 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.26■□□□□ 0.83
XRCC1P18887 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC1P18887 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
XRCC1P18887 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
XRCC1P18887 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC1P18887 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC1P18887 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC1P18887 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC1P18887 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
XRCC1P18887 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC1P18887 RARRES2P4-201ENST00000514074 484 ntBASIC20.25■□□□□ 0.83
XRCC1P18887 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.25■□□□□ 0.83
XRCC1P18887 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.25■□□□□ 0.83
XRCC1P18887 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC1P18887 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC1P18887 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.25■□□□□ 0.83
XRCC1P18887 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
XRCC1P18887 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.25■□□□□ 0.83
XRCC1P18887 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
XRCC1P18887 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
XRCC1P18887 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
XRCC1P18887 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
XRCC1P18887 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
XRCC1P18887 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.24■□□□□ 0.83
XRCC1P18887 MKRN4P-201ENST00000444706 1521 ntBASIC20.24■□□□□ 0.83
XRCC1P18887 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC1P18887 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
XRCC1P18887 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
XRCC1P18887 AC016405.3-201ENST00000607710 860 ntBASIC20.24■□□□□ 0.83
XRCC1P18887 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.24■□□□□ 0.83
XRCC1P18887 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.24■□□□□ 0.83
XRCC1P18887 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
XRCC1P18887 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC1P18887 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC1P18887 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC1P18887 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.24■□□□□ 0.83
XRCC1P18887 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.24■□□□□ 0.83
XRCC1P18887 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
XRCC1P18887 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC1P18887 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.23■□□□□ 0.83
XRCC1P18887 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
XRCC1P18887 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC1P18887 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC1P18887 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC1P18887 AC073210.2-201ENST00000430369 194 ntBASIC20.23■□□□□ 0.83
XRCC1P18887 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC1P18887 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.23■□□□□ 0.83
XRCC1P18887 AC093787.1-201ENST00000450396 207 ntBASIC20.23■□□□□ 0.83
XRCC1P18887 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.23■□□□□ 0.83
XRCC1P18887 AL138781.1-201ENST00000566567 1274 ntBASIC20.23■□□□□ 0.83
XRCC1P18887 AL391422.3-201ENST00000603791 2761 ntBASIC20.23■□□□□ 0.83
XRCC1P18887 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.23■□□□□ 0.83
XRCC1P18887 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
XRCC1P18887 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC1P18887 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.23■□□□□ 0.83
XRCC1P18887 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC1P18887 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
XRCC1P18887 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
XRCC1P18887 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
XRCC1P18887 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.22■□□□□ 0.83
XRCC1P18887 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.22■□□□□ 0.83
XRCC1P18887 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
XRCC1P18887 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
XRCC1P18887 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.22■□□□□ 0.83
XRCC1P18887 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
XRCC1P18887 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
XRCC1P18887 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms