Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC17.87■□□□□ 0.45
LMX1BO60663 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.87■□□□□ 0.45
LMX1BO60663 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.87■□□□□ 0.45
LMX1BO60663 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.87■□□□□ 0.45
LMX1BO60663 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
LMX1BO60663 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
LMX1BO60663 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
LMX1BO60663 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.87■□□□□ 0.45
LMX1BO60663 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
LMX1BO60663 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.86■□□□□ 0.45
LMX1BO60663 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC17.86■□□□□ 0.45
LMX1BO60663 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
LMX1BO60663 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC17.86■□□□□ 0.45
LMX1BO60663 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
LMX1BO60663 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.86■□□□□ 0.45
LMX1BO60663 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC17.86■□□□□ 0.45
LMX1BO60663 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC17.86■□□□□ 0.45
LMX1BO60663 MFSD11-216ENST00000590393 1141 ntBASIC17.86■□□□□ 0.45
LMX1BO60663 AC231657.2-201ENST00000624556 255 ntBASIC17.86■□□□□ 0.45
LMX1BO60663 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 AL162377.1-201ENST00000618844 1793 ntBASIC17.86■□□□□ 0.45
LMX1BO60663 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.86■□□□□ 0.45
LMX1BO60663 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.86■□□□□ 0.45
LMX1BO60663 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LMX1BO60663 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LMX1BO60663 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1BO60663 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1BO60663 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1BO60663 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LMX1BO60663 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.85■□□□□ 0.45
LMX1BO60663 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1BO60663 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
LMX1BO60663 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1BO60663 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.85■□□□□ 0.45
LMX1BO60663 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LMX1BO60663 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1BO60663 AC083906.2-201ENST00000511578 360 ntBASIC17.85■□□□□ 0.45
LMX1BO60663 KRT87P-202ENST00000534226 1464 ntBASIC17.85■□□□□ 0.45
LMX1BO60663 AC142086.2-201ENST00000569753 217 ntBASIC17.85■□□□□ 0.45
LMX1BO60663 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1BO60663 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
LMX1BO60663 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.85■□□□□ 0.45
LMX1BO60663 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC17.85■□□□□ 0.45
LMX1BO60663 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LMX1BO60663 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.85■□□□□ 0.45
LMX1BO60663 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LMX1BO60663 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1BO60663 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
LMX1BO60663 STAC-204ENST00000457375 1366 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1BO60663 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC17.84■□□□□ 0.45
LMX1BO60663 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 NAA20-201ENST00000310450 920 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1BO60663 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.84■□□□□ 0.45
LMX1BO60663 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.84■□□□□ 0.45
LMX1BO60663 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.84■□□□□ 0.45
LMX1BO60663 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.84■□□□□ 0.45
LMX1BO60663 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LMX1BO60663 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
LMX1BO60663 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LMX1BO60663 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LMX1BO60663 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC17.83■□□□□ 0.45
LMX1BO60663 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC17.83■□□□□ 0.45
LMX1BO60663 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.83■□□□□ 0.45
LMX1BO60663 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC17.83■□□□□ 0.45
LMX1BO60663 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms