Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TCRBV7S3A2A0A539 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 KRT8P36-201ENST00000489121 1440 ntBASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 AC007322.3-201ENST00000426526 701 ntBASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TCRBV7S3A2A0A539 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.91
TCRBV7S3A2A0A539 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC20.7■□□□□ 0.9
TCRBV7S3A2A0A539 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.69■□□□□ 0.9
TCRBV7S3A2A0A539 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 AC125437.2-201ENST00000625180 2167 ntBASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TCRBV7S3A2A0A539 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TCRBV7S3A2A0A539 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms