Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC15.92■□□□□ 0.14
TRAV1-1A0A0B4J248 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 RARRES2P2-201ENST00000394842 485 ntBASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TRAV1-1A0A0B4J248 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 CD72-202ENST00000378430 585 ntTSL 3 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 AL117332.1-201ENST00000622628 974 ntBASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TRAV1-1A0A0B4J248 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 HES6-204ENST00000409182 863 ntTSL 2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 AC006455.2-201ENST00000429931 906 ntBASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 AC103724.3-201ENST00000564481 992 ntBASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 PWWP2AP1-201ENST00000429776 2273 ntBASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TRAV1-1A0A0B4J248 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 11.5 ms