Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 AC004854.2-201ENST00000608450 1441 ntBASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 KRT18P14-201ENST00000534205 1250 ntBASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
PCDHA3Q9Y5H8 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 SMG8-203ENST00000578922 2178 ntBASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
PCDHA3Q9Y5H8 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.3■■□□□ 1
PCDHA3Q9Y5H8 AC019069.1-201ENST00000610008 1333 ntBASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 KRT8P36-201ENST00000489121 1440 ntBASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 AC007322.3-201ENST00000426526 701 ntBASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.29■■□□□ 1
PCDHA3Q9Y5H8 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
PCDHA3Q9Y5H8 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHA3Q9Y5H8 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms